BAC Information

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BAC

Clone NameMSMg01-319A17
Chromosome14 (Build37)
Map Location 124,786,899 - 124,787,565
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319A17.T7 (MSMg01no319_a17.b1)MSMg01-319A17.TJ (MSMg01no319_a17.g1)
ACCAG438675AG438676
length741746
length of high quality
(start - end)
667 (68 - 734)302 (69 - 370)
definitionCHROMAT_FILE: MSMg01no319_a17.b1 PHD_FILE: MSMg01no319_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:19 2005CHROMAT_FILE: MSMg01no319_a17.g1 PHD_FILE: MSMg01no319_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAGATCCGCGGAATTCAG
TCTGCTTCCTACATATCAATGATATCTTAAAATTATAGTTCATCGTTCTG
TTTAGGAAAGCCTCTAGCCTACACTCACTGCATCTGTCATATCGCCTTTT
GTAGAAATTCAGGCAGCAGGAAAAAAATATTTACTCTTCCAGGTTATCTC
CTAGAAAATCTCTTTCATTGAAGGGACATCCTTCTAAGACAGTCTTCTTG
TTAAAGAAAACGGATATTTTTCAGCTTTTACCTGCTTGATTATTGGGCAG
CACATTATATTACTGATAATTAAATCACAGAATTGCGTGTCTGGATCATG
ATGAAATTATTTATGTATATTTAATATATATACTTTACATGTATGTATGT
GTAACACATGCATGCACCTTCTGCAGAAACTAGCATGTTGGATTTGCCTG
GAATTTATGTTCTGTGAGAAGTGATGTGGATGCTGGAAACCAAACTCTTT
CCAAGAGCAGCAAATGCTTTTAACCTCTGAGTCACCACTCCAGTCTCTGA
AATAAATACTCCAAAGAATAATAGATTAAAGGAACTTAATTGTCTCAAGG
CCTATTTTACATGCTTTATGCTTATTAAAGTATTTGAAAATCACAGATAA
ATCTATTCTATAGATAACTGTGTCTTGACAATTTATAGTCTCTAAATAGG
GAAATTTTGATAAAATTACTTGTAGATGCTGAAGTGGCAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGTTTAGTTCTATACCTCATCTTTTAATTG
GGTTGTTTGGTTTCTTGCTGGTTAGCTTCTTGAGTTTTTTATATATTTTG
GATATTAGCCTTCTATCAGATGTGGGGTTAATGAGGATTTTTTCCCCAAT
CTGTAGGTTGCCAATTTGTCCTATTGACTATGTCCTTTGCCTTACAGAAG
CTTTCTAGTTTCTTGAGGTCCCATTTATCAATTGTTGATCTTAAAGCCTG
AGCCATTAGAGTTTTGTTTTTGAAATTTCCCCCTGTGCCAATGAGTTTGA
GGTTCTTTTTTTTTTTTCTCTCCACCCCCCCCCCAGTGTATCTGGTTTTA
TGTTGAGGTTTTTTCCCCCCCCCCAACAAAAAATTTGTGNAAGGGGGTGA
GGATGGATCTATTTTCAGTTTTTTACATATAGACTCTCTAAACCCATTTT
TGCCCCCTTATTTAATGATATGCCCTTTAATTGTCAGACTGGACAATCGA
CTGATTTATCTTCCCAGAATCCGACTGAAATTATATGGCAATCATTTCCT
TACATTAGTAATTCCTTTATTCGCTGTCACTTTAATCTATGGATTATTCA
CCCCGAACGTTTTTTTTGTTCTTGCTGCATCACTACTTTAATCCTTACTA
TATTTTATTCTTACCCTTTATTCCCTTCGATCTCCAATGTCCGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_a17.b1 MSMg01no319_a17.b1 CHROMAT_FILE:
MSMg01no319_a17.b1 PHD_FILE: MSMg01no319_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:19 2005
         (667 letters)



>mm_chr14_124786699_124787765
          Length = 1067

 Score = 1251 bits (647), Expect = 0.0
 Identities = 662/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgatatcttaaaattatagttcatcgttctgtttaggaaagcctctagcctacactca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aatgatatcttaaaattatagttcatcgttctgtttaggaaagcctctagtctacactca 260

                                                                       
Query: 61  ctgcatctgtcatatcgccttttgtagaaattcaggcagcaggaaaaaaatatttactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcatctgtcatatcgccttttgtagaaattcaggcagcaggaaaaaaatatttactct 320

                                                                       
Query: 121 tccaggttatctcctagaaaatctctttcattgaagggacatccttctaagacagtcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaggttatctcctagaaaatctctttcattgaagggacatccttctaagacagtcttc 380

                                                                       
Query: 181 ttgttaaagaaaacggatatttttcagcttttacctgcttgattattgggcagcacatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttaaagaaaacggatatttttcagcttttacctgcttgattattgggcagcacatta 440

                                                                       
Query: 241 tattactgataattaaatcacagaattgcgtgtctggatcatgatgaaattatttatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattactgataattaaatcacagaattgcgtgtctggatcatgatgaaattatttatgta 500

                                                                       
Query: 301 tatttaatatatatactttacatgtatgtatgtgtaacacatgcatgcaccttctgcaga 360
           |||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||
Sbjct: 501 tatttaatatatatactttacatgtatgtatgtgtagcacatgcatgcagtttctgcaga 560

                                                                       
Query: 361 aactagcatgttggatttgcctggaatttatgttctgtgagaagtgatgtggatgctgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactagcatgttggatttgcctggaatttatgttctgtgagaagtgatgtggatgctgga 620

                                                                       
Query: 421 aaccaaactctttccaagagcagcaaatgcttttaacctctgagtcaccactccagtctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaccaaactctttccaagagcagcaaatgcttttaacctctgagtcaccactccagtctc 680

                                                                       
Query: 481 tgaaataaatactccaaagaataatagattaaaggaacttaattgtctcaaggcctattt 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 tgaaataaatactccaaagaataatagattaaaggaacttaatcgtctcaaggcctattt 740

                                                                       
Query: 541 tacatgctttatgcttattaaagtatttgaaaatcacagataaatctattctatagataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacatgctttatgcttattaaagtatttgaaaatcacagataaatctattctatagataa 800

                                                                       
Query: 601 ctgtgtcttgacaatttatagtctctaaatagggaaattttgataaaattacttgtagat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgtgtcttgacaatttatagtctctaaatagggaaattttgataaaattacttgtagat 860

                  
Query: 661 gctgaag 667
           |||||||
Sbjct: 861 gctgaag 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)