BAC Information

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BAC

Clone NameMSMg01-319D13
Chromosome14 (Build37)
Map Location 73,706,906 - 73,707,060
singlet/doubletsinglet
Overlap geneRb1
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, P2ry5
Downstream geneItm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578, LOC629583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319D13.T7 (MSMg01no319_d13.b1)MSMg01-319D13.TJ (MSMg01no319_d13.g1)
ACCAG438806AG438807
length717726
length of high quality
(start - end)
---155 (128 - 282)
definitionCHROMAT_FILE: MSMg01no319_d13.b1 PHD_FILE: MSMg01no319_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:31 2005CHROMAT_FILE: MSMg01no319_d13.g1 PHD_FILE: MSMg01no319_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCGAGGAGCCGCGGA
TGTGTGGAGACTTTCAAACAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXGA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACCAAGAGAAAGGAATTAATGGAATAAAACGAAAAGAAA
AATTAAAAGTTGTTTGTTTTCCCCAAGAAACAAAAATGCCTTTATTTAAA
ATTATTCAATCATTTCTACAGAAATCCCCATAGACTCAATAGAGACGATG
AGATCTATTAAACATTCTAACAAGGATACAGGAGACAAGGATAGGGCACA
AAACCCAACTGCTTTGCTATATCCCAACAAATAAACTGCAATTAATAAAA
AATACAATTAATCAGAATGTGTTTGTACATGCCTTTAACTCTTGATTATA
GAGTGTTTGCTTTTTTTCTGCCCATACTGAGCTCCAGGCCAGTCAGGAAG
GAATATTTATATTTGTGACACACCCACAAAAANAAAAATTTATATGTGTA
GATATGTATATTATATATACATACATATGTATGTATATGTGTGTGTGTGC
GAGTGCGTGTGTGTGTGTGTGTGATATTTTCGTATGCTAAGTAGTGTATA
GAGGAAAAATGATCATTATATATATAAATTGATCGATAAGAAGTTTACTT
TTTCATGTTTGCATATCAAATAGCTAAATTTTTTATGTCTTTCATACACC
GGACATATTCTGAGATATTAATTTTTTTTCTTTTATGGACTTATAAAAGA
TTTTTACATTGTTACTTTTTAGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_d13.g1 MSMg01no319_d13.g1 CHROMAT_FILE:
MSMg01no319_d13.g1 PHD_FILE: MSMg01no319_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:32 2005
         (155 letters)



>mm_chr14_73706706_73707260
          Length = 555

 Score =  277 bits (143), Expect = 3e-79
 Identities = 152/155 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaaaaatgcctttatttaaaattattcaatcatttctacagaaatccccatagactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aaacaaaaatgcctttatttaaaattattcaatcatttctacagaaatccccaaagactc 260

                                                                       
Query: 61  aatagagacgatgagatctattaaacattctaacaaggatacaggagacaaggatagggc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aatagagacaatgagatctattaaacattctaacaaggatacaggagacaaggttagggc 320

                                              
Query: 121 acaaaacccaactgctttgctatatcccaacaaat 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaaacccaactgctttgctatatcccaacaaat 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)