BAC Information

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BAC

Clone NameMSMg01-319E13
Chromosome14 (Build37)
Map Location 73,744,920 - 73,745,414
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5
Downstream geneItm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578, LOC629583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319E13.T7 (MSMg01no319_e13.b1)MSMg01-319E13.TJ (MSMg01no319_e13.g1)
ACCAG438850AG438851
length736737
length of high quality
(start - end)		552 (121 - 672)428 (70 - 497)
definitionCHROMAT_FILE: MSMg01no319_e13.b1 PHD_FILE: MSMg01no319_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:36 2005CHROMAT_FILE: MSMg01no319_e13.g1 PHD_FILE: MSMg01no319_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
ACACCTCACTTGAGGGCAGTCACACATTATTTGTCTTTTTATGCCTGCCT
CATTGCACTTATTCAGCCCAATCAGAGTGTACCTATGTGGATAATATTCG
ATTGTATGAATTACCATATCTTGCTTATTCATTCATCTATCGATAGACAT
TTGAGACAATTAATATCGTTAGGCTATTTAGTCTTGTAATCCACGAATGC
TGTATGATTTAGGATTTATTTAGGCCAGCAAGTGAGAACTACTTGGAAGG
TTTGTTTTTTTAAAACACAGACTCTCTTGGTATCTTAGTTGGATTTCTAT
TGTGATGACCATGATGACTAACAGCAACTTGGGGAGGAGAGAGCTGACTT
TGGTTTATGCACCCCACATTATAGTTTATTGAGGGAGGCCAGGGCAGGAA
ATCTAGGCATGAACCTGGGGACTGGAACTGAAGCAGAGGCCATAGAAGGA
TGCTGCTTACTGGCTTGCTCCCCATGACTAATTCAGTCTGCTTTCTTATA
TCTCCCAGGACCACCTGCCCAGGATGGCACCCCCCAGTATACCACCTCCA
ATATTAATTATCCATCAAGGAAATTCCTCCAGATTTGCCTCCCATCCAAT
CTGATGGAGGCATCTCTAAGTTCTCTTACCAGTGACCCTGGCTGTGTCCT
GTTGACAAAAACTATGTAGTATGCTTGAAAGTTCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGAATTAATGCAATAAAACAAAAAGAAAAA
TTAAAAGTTGTTTTGACTCCGAAGAAACAAAAATGCCTTTATTTAAAATT
ATTCAATCATTTCTACAGAAATCCCCAAAGACTCAATAGAGACAATGAGA
TCTATTAAACATTCTAACAAGGATACAGGAGACAAGGTTAGGGCACAAAA
CCCAACTGCTTTGCTATATCCCAACAAATAGACTGCAATTAAAAAAAAAT
ACAATTAAGCAGAATGTGGTGCACATGCCTTTAACTCTTGATTTTTGTGT
GTTTGCATCCACCCTGGCCATAGTGAGCTCCAGGCCAGTCAGGAAGGAAT
ACACACACACACACACACACACACACACACACACATTTATATGTGTATAT
ATGTATATTATATATACATACATATGTATGTATATGTGTGTGTGTGNGNN
NNTNNNNTNNNNNNTTTTTTTTTNTTTTTTTTTTTNTTTTTTTNTTTTTT
TTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTCTCT
CTTTTTTTTTTTTTTTTCTTNTTTTTTTTTTTCCCCTTCCCCTCTTTTTT
TTTTTCTTTCCTTTCCCTTCCCTCTCTTTTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_e13.b1 MSMg01no319_e13.b1 CHROMAT_FILE:
MSMg01no319_e13.b1 PHD_FILE: MSMg01no319_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:36 2005
         (552 letters)



>mm_chr14_73744920_73745871
          Length = 952

 Score =  864 bits (447), Expect = 0.0
 Identities = 482/495 (97%), Gaps = 4/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagagtgtacctatgtggataatattcgattgtatgaattaccatatcttgcttattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atcagagtgtacctatgtggataatattcgattgtatgaattaccatatcttgcttattc 436

                                                                       
Query: 61  attcatctatcgatagacatttgagacaattaatatcgttaggctatttagtcttgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attcatctatcgatagacatttgagacaattaatatcgttaggctatttagtcttgtaat 376

                                                                       
Query: 121 ccacgaatgctgtatgatttaggatttatttaggccagcaagtgagaactacttggaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccacgaatgctgtatgatttaggatttatttaggccagcaagtgagaactacttggaagg 316

                                                                       
Query: 181 tttgtttttttaaaacacagactctcttggtatcttagttggatttctat---tgtgatg 237
           |||||||| |||||||||||||| ||||||||||||||||||||||||||   |||||| 
Sbjct: 315 tttgttttgttaaaacacagactatcttggtatcttagttggatttctattgctgtgata 256

                                                                       
Query: 238 accatgatgactaacagcaacttggggaggagagagctgactttggtttatgcaccccac 297
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| | | || 
Sbjct: 255 accatgatgactaaaagcaacttggggaggagagagctgactttggtttatgtatctcaa 196

                                                                       
Query: 298 attatagtttattgagggaggccagggcaggaaatctaggcatgaacctggggactggaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 attatagtttattgagggaggccagggcaggaaatctaggcatgaacctggggactggaa 136

                                                                       
Query: 358 ctgaagcagaggccatagaaggatgctgcttactggcttgctccccatgactaattcagt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ctgaagcagaggccatagaaggatgctgcttactggcttgctccccatgactaattcagt 76

                                                                       
Query: 418 ctgctttcttatatctcccaggaccacctgcccaggatggcacc-ccccagtataccacc 476
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 75  ctgctttcttatatctcccaggaccacctgcccaggatggcaccatcccagtataccacc 16

                          
Query: 477 tccaatattaattat 491
           |||||||||||||||
Sbjct: 15  tccaatattaattat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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