BAC Information

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BAC

Clone NameMSMg01-319F09
Chromosome14 (Build37)
Map Location 47,559,465 - 47,718,730
singlet/doubletdoublet
Overlap geneSamd4
Upstream geneLOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1
Downstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319F09.T7 (MSMg01no319_f09.b1)MSMg01-319F09.TJ (MSMg01no319_f09.g1)
ACCAG438888AG438889
length831751
length of high quality
(start - end)
181 (123 - 303)233 (119 - 351)
definitionCHROMAT_FILE: MSMg01no319_f09.b1 PHD_FILE: MSMg01no319_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:39 2005CHROMAT_FILE: MSMg01no319_f09.g1 PHD_FILE: MSMg01no319_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,718,551 - 47,718,730)(47,559,465 - 47,559,697)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATT
CCAACCATTTGCTATGACTTCCGAGGAAAGCCAGGCTTACTATTTGCAGT
CGTGAAAGCTGTATTCTGCCAACTTCAGGGGGTGCCACGCACAGGCGAGC
ACCATAGGTTTCACAGTTACCACTTGCAATAAATGCCATCCTAGCGCCTT
GAGAAAATAATTTGCATAGCCTCCCTGCATCTGTGACAGAGGGATGGTAA
GGCTTAGGGAAGGGGTGAGTGGAGAAGGGGAGACAGAAGAGGAGGGGGAG
TGCCCANTATCCTTTTTTTTTTTTTATATATTCCCCGGGGTGCAGGGGAT
TAGGAGCTGTTTTTTTTTTTTTCCCCCCCCCCCCCCCTTTTTGTATTTAA
TGATTTTATTCGTTTTTTTTCTCACCTACCCCCAACAAAAAAAAAAAAAC
CTTTTCCGTCGTGGCCGTAATTGTTTACTATTACAATTACATTTTCAACT
CCTTTCCCCCCCGCGTCCTATTACATGTTAGATTCAGCTTGTTCTCCTCT
CAATCCTCTTTTATATCTATTTTTTATATTTCCACTCATCATATCTTTAC
TTATTCCATTTTCCTCGTATATGCACATATTTTAACCCACACTTTTCGTG
CTTGCGGTGTATCTATGTACTCTTTTTGTATATCTTTATAAACCTCCATT
TCTTATTTTACCCGATATAAATTCATCTCTTATTGATATCATCACTGCCG
AACTCTGCGTGCGAGTTTCATCCATATTATTATGCCTATTCTACCACGGC
CATTTCTATTCTTATTTATTGGTGTGTAGAT
AAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGAAAATTCTCGTGATGGCGTGATTGGGTAAGCTGAGTTACA
TCTCCCGCATTTTGCCCCGCCTTTGGAAGGCTGTCAGATGGTTTGCTGAT
AACTGATATCATTGATTATCCAAGCTGAACAGCTCTCTGTAAAACCTGCT
TTTGGAAAACTGGTCAGAAATCTATGTGTATAATTGTTTAATACATTTTG
GTTCTCGGAAACATGCAGTTTTGGTACCCCATAGAGGAAGTCCAGGGGAG
GCCAAAGAATTTATACTTATCAGGAGACAATCAGTCTCTACAGTTTAGCT
GGGATCCTATGATAAAGAGCACTGCACACCGAACAGTACTTCATAGTTTG
TAGACCACACCCCCCCCTGCGATTTCATCCAATCCTCTGCATAGCTCAGA
TCAGGGCTGTGGGACTTGAGCACTTTAAATTGAAGCAGCCTAGGTCACTC
GGCTGATTAAGTGGCAGTGCCAAGTAAAAGACATGAATCGTCTGCTCCAG
GACTATTCTCTTGGACTGTGTCTTATTTCTCCTTGTTTGCTCATAATAAT
TTCTTTATCAGGTTAACTTTTGTAATCCTTTTCTGAAGGGGGAATCCTTT
AATAATTCCCAAATTGGGGTGGAAACATCGTCTGTGTTTTGTACCGTAGC
TGTCCTTCTTCCTAGTACATTTTTACCTCATTCACTTAATTATCTTATCA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_f09.b1 MSMg01no319_f09.b1 CHROMAT_FILE:
MSMg01no319_f09.b1 PHD_FILE: MSMg01no319_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:39 2005
         (181 letters)



>mm_chr14_47718351_47718931
          Length = 581

 Score =  348 bits (180), Expect = e-100
 Identities = 180/180 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagggggtgccacgcacaggcgagcaccataggtttcacagttaccacttgcaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttcagggggtgccacgcacaggcgagcaccataggtttcacagttaccacttgcaataa 321

                                                                       
Query: 61  atgccatcctagcgccttgagaaaataatttgcatagcctccctgcatctgtgacagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgccatcctagcgccttgagaaaataatttgcatagcctccctgcatctgtgacagagg 261

                                                                       
Query: 121 gatggtaaggcttagggaaggggtgagtggagaaggggagacagaagaggagggggagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gatggtaaggcttagggaaggggtgagtggagaaggggagacagaagaggagggggagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no319_f09.g1 MSMg01no319_f09.g1 CHROMAT_FILE:
MSMg01no319_f09.g1 PHD_FILE: MSMg01no319_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:39 2005
         (233 letters)



>mm_chr14_47559265_47559897
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctttggaaggctgtcagatggtttgctgataactgatatcattgattatccaagctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctttggaaggctgtcagatggtttgctgataactgatatcattgattatccaagctga 260

                                                                       
Query: 61  acagctctctgtaaaacctgcttttggaaaactggtcagaaatctatgtgtataattgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagctctctgtaaaacctgcttttggaaaactggtcagaaatctatgtgtataattgtt 320

                                                                       
Query: 121 taatacattttggttctcggaaacatgcagttttggtaccccatagaggaagtccagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatacattttggttctcggaaacatgcagttttggtaccccatagaggaagtccagggg 380

                                                                
Query: 181 aggccaaagaatttatacttatcaggagacaatcagtctctacagtttagctg 233
           |||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 381 aggccaaagaatttatacgtagcaggagacaatcagtctctacagtttagctg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)