BAC Information

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BAC

Clone NameMSMg01-319F11
Chromosome14 (Build37)
Map Location 115,526,927 - 115,527,270
singlet/doubletsinglet
Overlap geneGpc5
Upstream geneLOC668791, LOC100043821, LOC100043521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319F11.T7 (MSMg01no319_f11.b1)MSMg01-319F11.TJ (MSMg01no319_f11.g1)
ACCAG438892AG438893
length719715
length of high quality
(start - end)
496 (127 - 622)342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no319_f11.b1 PHD_FILE: MSMg01no319_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:40 2005CHROMAT_FILE: MSMg01no319_f11.g1 PHD_FILE: MSMg01no319_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACATATTTCCCGAGACACTGAAATTTATAGAGGAGAAAGTAGGG
AAAACCCTCGAAAATATGTGCACCGGGGAAAAATTCCTAAACAGAACAGC
AATGACCTATGCTGTAAGATCAAAAATCGACAAATGGGACCTCATAAAAT
TGCAAAGCTTCTGTAAGGCAAAGAGCTATATACAAAGCACTCAAGAAGCT
GAACTCCAGAAATTCAAATAACCACATTAAAAATGGGGTACAGAGGTAAA
CAAAGAATTCTCAACTGAGAAATACTGAAGGGCTGAGAAGCACTTGAAAA
AATGTTCAACATCCTTAATCATCACGGAAATGCAAATCAAAACAACCTTG
AGATTCTACCTCACACCACCCCCAATGGCTAGGATCAAAAGTTCAGGTGA
CAGCAGATGCTGCAGAGGATGTGGAGAAAAAGGAACACCCCCTCCATTGC
TGATGGGATTGCAGGCTTGTACAACCATTCAGAAAATCAGTCTGGCGGTT
CCTCAGAAAACTGGACATAGTACTATCGGTAGATCCAGCAATACCTCTCC
TGGGCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCACCCTTATTTATAATAGCCACAAGCTGGAAAGGACCCAGATGGC
CCTCAACAGAGGAATGGAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGGCAACCGAAATAAAGGGAGGTAT
GATACCTCCAGGAGACAATGAGTGCTTTGTGACTACTGGCTTAAACGGCC
ATTACTGAAGTATTCAAATTCTAGCTTTAGTTCTACTCTGTATTCGTGGA
AATTGAGAATATTTTTTTAATGTGGAAGAGATACAACTGTAATAAAAACA
AGATGAAATCAAACCCTGTAATCTTGAGTTTGAAGTATAAATAAAAATCA
TCAAGAACTTTTCCTTTAAGAAATATGTTTCCTAATGTTTTAGGAAAGAT
CTAGAAGTTATAACTCTCCAGGGCCCACGTCATGGCCATGAAATGACATT
TCTCTCAAGAAGAAAACCCCCCTCTTTAAGAAATGGCTTTGGGCTTAAAG
AGATGGCTCCCCTACTCAGTGTGCACACTGTACTTATAGAGGACATGAGT
GTGGTCCCCAGCACCCATGTCTAGAGGTTCAGTCTCCTGGAACTCCAGCT
CCAGAGGACATGATGCCTTCATCTGATCTCTATAGACCTTGGCATTCTCA
TGCTCAGAGAGACTTTTGAGACAGGATTTCACTCAGTCACACACACACAC
TCATGCACACACACACATACTCTCATTTACACACACACACCCTTAAATTA
ACCTAAAATAATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_f11.g1 MSMg01no319_f11.g1 CHROMAT_FILE:
MSMg01no319_f11.g1 PHD_FILE: MSMg01no319_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:40 2005
         (342 letters)



>mm_chr14_115526727_115527470
          Length = 744

 Score =  654 bits (338), Expect = 0.0
 Identities = 342/344 (99%), Gaps = 2/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggcaaccgaaataaagggaggtatgatacctccaggagacaatgagtgctttgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agtggcaaccgaaataaagggaggtatgatacctccaggagacaatgagtgctttgtgac 485

                                                                       
Query: 61  tactggcttaaacggccattactgaagtattcaaattctagctttagttctactctgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tactggcttaaacggccattactgaagtattcaaattctagctttagttctactctgtat 425

                                                                       
Query: 121 tcgtggaaattgagaata--tttttttaatgtggaagagatacaactgtaataaaaacaa 178
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tcgtggaaattgagaatatttttttttaatgtggaagagatacaactgtaataaaaacaa 365

                                                                       
Query: 179 gatgaaatcaaaccctgtaatcttgagtttgaagtataaataaaaatcatcaagaacttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gatgaaatcaaaccctgtaatcttgagtttgaagtataaataaaaatcatcaagaacttt 305

                                                                       
Query: 239 tcctttaagaaatatgtttcctaatgttttaggaaagatctagaagttataactctccag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcctttaagaaatatgtttcctaatgttttaggaaagatctagaagttataactctccag 245

                                                       
Query: 299 ggcccacgtcatggccatgaaatgacatttctctcaagaagaaa 342
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggcccacgtcatggccatgaaatgacatttctctcaagaagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 744
Length adjustment: 9
Effective length of query: 333
Effective length of database: 735
Effective search space:   244755
Effective search space used:   244755
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)