BAC Information

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BAC

Clone NameMSMg01-319M11
Chromosome14 (Build37)
Map Location 109,026,192 - 109,026,531
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319M11.T7 (MSMg01no319_m11.b1)MSMg01-319M11.TJ (MSMg01no319_m11.g1)
ACCAG439202AG439203
length732732
length of high quality
(start - end)
346 (67 - 412)342 (72 - 413)
definitionCHROMAT_FILE: MSMg01no319_m11.b1 PHD_FILE: MSMg01no319_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:10 2005CHROMAT_FILE: MSMg01no319_m11.g1 PHD_FILE: MSMg01no319_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTAATTTTCATTAATTAACGAAGGATCTCAGTATCGTGACCTTGCTGC
TTAGAATGGCTTTTATTGCCTGTCATAACTTTAATGAAATATATGCTCAT
TTATTTTATTCATTCTAGAAAAAAATCTATTCTTTCTTGATTTCTGTCTG
ATTAATATTTCATTTATCACTGAGCTGTTTAGTTTCCATGAGTTTATTAC
ATTTCTGTTGTTTCTGGTGATATCAGTATCTAGCTACAGTCCTTGATGGT
CAGATAAAATGTAGACTGCTATTTCCATGTTCTTGTATTTGTTGAGACTT
GTTTTATGTCTAATATTTGGACAACTGTAGAAAAATTTTCATGAACTGTT
TAGGCGGTAGACACCCCCCCTGTTTCCATGAAATAAAATATTTTTAGTTC
CATTTGGTTGGTGATGCCAGTTAGCACATTATTTCTCTGTTTAGGATTTA
TCTGGGTGGTCTATCTTTTAGTGAGAGTGGGATACTGATGTTACTCACTA
TCAGCGTGTGAGTCAATATGCAATTTTATGTTATAGTAGTGTTTCTCTTA
TGAATTTGGATATTCTAGTGTCTGGTACATGGATATTGAGTATTGTATCG
TCTTAATGGTAGATCGTTTTCCCTTCTTTTACATATTATTCTATATTTTT
CTTTTTTCTTTTATTATTCTAATATTTTTTTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGATGAAAACTGAGGACCAAAAATACA
TGGAATACCATGTATTCAGCGAAACTCAACTCAATTTCTTTACATTTAGA
AGTTGTCTATCATATTTGAAAATATATTTGCTTAATATACATCATATAGC
CAATGTTTTTATCTTTGCTTTTCACAGTATCTTCCACCATAGAGTTCACA
ATTTATCAAGATAGTGGCAATGAATAAACACATAGCTGAGAGACACTAAC
TCAAGAATTTCTGTTACATATAATAAGAGAACAGAAAGATAAATGATACT
TTGAATGCTGAGGACCTAGGAGGGTTTATAATTTGAAATCATTTTATTAA
TATTCCTGTTCACACCCCCCCACCATGTTTTGATTTTGTAAAATTTTAAA
TAACTTTTAATTTTAAATAAAATCTTTATATATTTTTCAAATTTTATGTC
ATTAAATATTAACATTTTATTTCTTTTTTATTAGATATTTTCTTTATTTA
TATTTCAAATGCTATCCTCTTTCTTAGTTTCTGCTCCGAAAATACCCTAT
CCCCTCCCCCTGCCCCGTTCCCCAACCCACCCACTCTTGTTTCCTAGCCC
TGTATTTCCCCTATACTGGATCATAGAATCTTCCCCAGACAATGTTTTCT
CCTCCCATTGATGGCCTACTATTTTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_m11.g1 MSMg01no319_m11.g1 CHROMAT_FILE:
MSMg01no319_m11.g1 PHD_FILE: MSMg01no319_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:10 2005
         (342 letters)



>mm_chr14_109025992_109026732
          Length = 741

 Score =  613 bits (317), Expect = e-180
 Identities = 335/341 (98%), Gaps = 1/341 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggatgaaaactgaggaccaaaaatacatggaataccatgtattcagcgaaactcaact 60
           |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||
Sbjct: 201 ttggatgaaaactgaggaccaaaaatacatggaataccatgta-ccagggaaactcaact 259

                                                                       
Query: 61  caatttctttacatttagaagttgtctatcatatttgaaaatatatttgcttaatataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caatttctttacatttagaagttgtctatcatatttgaaaatatatttgcttaatataca 319

                                                                       
Query: 121 tcatatagccaatgtttttatctttgcttttcacagtatcttccaccatagagttcacaa 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 320 tcatatagccaatgtttttatctttgcttttcacagtatcttcctccatagagttcacaa 379

                                                                       
Query: 181 tttatcaagatagtggcaatgaataaacacatagctgagagacactaactcaagaatttc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctatcaagatagtggcaatgaataaacacatagctgagagacactaactcaagaatttc 439

                                                                       
Query: 241 tgttacatataataagagaacagaaagataaatgatactttgaatgctgaggacctagga 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgttacataaaataagagaacagaaagataaatgatactttgaatgctgaggacctagga 499

                                                    
Query: 301 gggtttataatttgaaatcattttattaatattcctgttca 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gggtttataatttgaaatcattttattaatattcctgttca 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)