BAC Information

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BAC

Clone NameMSMg01-320F19
Chromosome14 (Build37)
Map Location 36,222,483 - 36,407,475
singlet/doubletdoublet
Overlap geneGrid1
Upstream geneBmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320F19.T7 (MSMg01no320_f19.b1)MSMg01-320F19.TJ (MSMg01no320_f19.g1)
ACCAG439616AG439617
length739742
length of high quality
(start - end)
234 (126 - 359)189 (131 - 319)
definitionCHROMAT_FILE: MSMg01no320_f19.b1 PHD_FILE: MSMg01no320_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:51 2005CHROMAT_FILE: MSMg01no320_f19.g1 PHD_FILE: MSMg01no320_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,222,483 - 36,222,714)(36,407,287 - 36,407,475)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTTGCACACACAGCATAGGATGAAGTATTCTAAATGAGGTAGCA
CCTATTCCTAAGGATTAGACCACAAAACAAAGCTAGTAACATTGAGGCCA
TACACAAGGACATTGGAGGAGAGCAACTAAATAACTGAGTCTTGGGTCCC
TGACTTTCCATCCTTTTGAGCTGGTCTGTTTCTCTTGTCTTAGATCCTGT
AGTTAGCTCAGGGACATCCTAGCAGCTAGCTTTGTGGAGAGGCTGCACAT
CAATAGCCAACATATGCACATATTATAATAAAAATCCACAGACCAACAAT
TCTCTATTTGGATCCTTGCTCCCCTCCTCCCGGTACAAGGAGTCAGTAAC
AGTGCCTACCTCATATTGTCAAAAAAAGAGACATACATTTGTGAAGAGTG
AAGCCCCTGACATCTCCCATATAGCTATATGTTGGATAAACTGGTAAAGA
AGGTACAAAAAGCTCAATATATGAGATGCACTGAGACATGGTAGATGTCT
GTTCATGTTATATTGAGCAAGAAATGAGAAAGAGAAAATGTGGATAGAGT
GAGAGACAAACATAGCTAGGGAAAGTTTTGGATTATTTCTAGGAGTCTCC
AGTGCATGGCAGGGTCTCACTGTCCTTGAATCTGTGACAAGGGCTGTCAG
ACATCAGAGTTCCACCTCTACATGTTGAGAATGTGATAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGGCAGCTTGGTCTATATAGAG
AGTTCAAGGGCAGCCATTTCTATCGAGTGAGACCCCGTCTCAAACAAACA
AAGGAATGAATATGATCATAGTTAATGCACATTAAAGCCACTGTTAGGTT
CCCTTCACCTCCTGATGCTTGAAAATAAAATACATGATCTGAAGAGATCT
GAAGAGATGTGGGACAATAGCAGCTGTCAGACAAAGACATCAAGGCCTGG
AAATCGGTATGGTTGCCTCTGTTGTCTGGGAACTCAGGGGTCTAATAGAA
AGGCATGCTTAAATCACTCACCNAACCANCCCACTCAGTGCTTTCACAGT
AATCCCAAACAAAAGCAGATGTAAAAAAAAATAAATAAAGAATTCATGAA
TTATGGCACATTCATGCAATGAAATCCTCCACAGAGATGAAAACGAACAT
CATGAACAAATGTTGGTAAATCTCTCAAGTCAACGTTGAAAGAAAAAAGT
ATGTGCGTGTGCATGTGTGTGTGTGTGCGTGTATGTATGTATGTATATAT
ATGTGTGTGTGTGTGTGTATATATATGCATATATATATACATATATATGC
ATATATATATATATATTTATGATTCTGACCATACATATTCTCCAATCTAA
CAATGGCACTACTTTTAAGGCCCTGCAGGTGTCTCCTATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_f19.b1 MSMg01no320_f19.b1 CHROMAT_FILE:
MSMg01no320_f19.b1 PHD_FILE: MSMg01no320_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:51 2005
         (234 letters)



>mm_chr14_36222283_36222916
          Length = 634

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaagctagtaacattgaggccatacacaaggacattggaggagagcaactaaataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaagctagtaacattgaggccatacacaaggacattggaggagagcaactaaataac 260

                                                                       
Query: 61  tgagtcttgggtccctgactttccatccttttgagctggtctgtttctcttgtcttagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtcttgggtccctgactttccatccttttgagctggtctgtttctcttgtcttagat 320

                                                                       
Query: 121 cctgtagttagctcagggacatcctagcagctagctttgtggagaggctgcacatcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgtagttagctcagggacatcctagcagctagctttgtggagaggctgcacatcaata 380

                                                               
Query: 181 gccaacatatgcacatattataataaaaatccacagaccaacaattctctat 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaacatatgcacatattataataaaaatccacagaccaacaattctctat 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_f19.g1 MSMg01no320_f19.g1 CHROMAT_FILE:
MSMg01no320_f19.g1 PHD_FILE: MSMg01no320_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:51 2005
         (189 letters)



>mm_chr14_36407087_36407675
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaccccgtctcaaacaaacaaaggaatgaatatgatcatagttaatgcacattaaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaccccgtctcaaacaaacaaaggaatgaatatgatcatagttaatgcacattaaagcca 330

                                                                       
Query: 61  ctgttaggttcccttcacctcctgatgcttgaaaataaaatacatgatctgaagagatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctgttaggttcccttcacctcctgatgcttgaaaataaaatacatgatctgaagagatct 270

                                                                       
Query: 121 gaagagatgtgggacaatagcagctgtcagacaaagacatcaaggcctggaaatcggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaagagatgtgggacaatagcagctgtcagacaaagacatcaaggcctggaaatcggtat 210

                    
Query: 181 ggttgcctc 189
           |||||||||
Sbjct: 209 ggttgcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)