BAC Information

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BAC

Clone NameMSMg01-320G01
Chromosome14 (Build37)
Map Location 40,186,689 - 40,186,880
singlet/doubletsinglet
Overlap geneNrg3
Upstream geneLOC100041521
Downstream geneLOC100040439, LOC218945, LOC100040470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320G01.T7 (MSMg01no320_g01.b1)MSMg01-320G01.TJ (MSMg01no320_g01.g1)
ACCAG439628AG439629
length777774
length of high quality
(start - end)
193 (128 - 320)236 (128 - 363)
definitionCHROMAT_FILE: MSMg01no320_g01.b1 PHD_FILE: MSMg01no320_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:52 2005CHROMAT_FILE: MSMg01no320_g01.g1 PHD_FILE: MSMg01no320_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTAGCTGCGCGGA
ATTCATGACCTATGCCTACACCAAATCTGGGGCTAGAGAACAGCTCCATA
AAGAGATTATGAGCGTGTTACCTCATGCAATCAGCCTGTGAGCAGAAGCC
AGTACTAAAGAAAGGCTTATGCTAGCAGAAATGCTGTCCTCATGGACTAA
AATGGGAACATACAATACAAAAATGAAAAAAGGCTGTAGGCATCCTGGAA
GGTTATATGATAAGGGAGTAAGCTCAGCAAATACTTTATCCTTTAAGGAG
GGGAAAGCATGACCATCTATGTTTTTTTGAGACTGAAATGTCTGGACTCT
CACCAGATACCCATCTTGTTTAGATCTGCCCCTTTCATGGTTTTGGTACA
GACAGGCTCTTATCAGGACTGACAATGCTAAACACCATAGGTCCTGCCCT
AGGTAAAATTTAAGACAATACAGGTACTCCAGCAGGATTAGTATAGAACC
AAGATTGTAATGTGCAATGTTTGATGTCCAAAATTGATTGGAAATTGTTC
TGCCAAAGTTTAAACTTGCTAGCCATTCATGATCCGATAACATTTAACCC
TTCCTGCCTTCAAAATGGTAAAGTTTCACTCTTAGGACTGTCCCCTTGGA
TTTTAATTTTTGAATAATTTTATATGGGGCATAATTTCTTACCAATATTC
CAAAATTGGATACAATATCCCGGTCTTCCACATGCATTCCATTTCCCCCC
CAGCTTGCTATAACTTTATTCTTGCAG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAGAATGCATTCAAGGTGGACCCA
ACTGGTTTGAATGGAATTGTATAACCCCACATGCATGAATCTGTATATGA
ACTTATGTGAGTTTATGCATATTTGCTTTATAAAAGTTTTTCTTCTGAAA
GTGTTATTCCCTTCTCCTGGTTCAATAGAACTTTATTGCTCCAAACTGCT
TCTCAGCCAAACAAGCAAGAGATATCTGGAAAACAAAATATAACAAAAAC
AAACAAACAAAAACGCTCTAACAATCCTTTAATCTCTTGCTGTTTTGGGA
TGAGTTTCTAAGTGTTTTTTTTTGCCGCCCCCTCCCCTCACAGGAACACA
GAAGGCAGGTTGGCTACTATAATATAGTAACTTAGATAAAAATAGGTAAA
CTTTTTATTATTATACAGCAGCGCTAAATATCTTGTAAGACAAAGTCTTA
TTTCCATATCTCTGCAAGAAAAAGTCTTACATTTCTCCTATGCTCTTTCT
CCCTTCACTGCTCCATGAATATCCCCTTAGTATATACGACTTTCTGCTGT
GGTTTGTCCCCACATCCTTCATCCCCAACCCTATTCAGTTTTATGACTTG
CAACACTGAAGCTTTTTTTTTTGATTACTCTCAAATTCCTTCCTCTTGCA
AAGAAGGATTAATACTCAAATTTGGTTCCCTCCTAATTTTCCCGCATCTC
ATTATCGTATTTTTGTACATATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_g01.b1 MSMg01no320_g01.b1 CHROMAT_FILE:
MSMg01no320_g01.b1 PHD_FILE: MSMg01no320_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:52 2005
         (193 letters)



>mm_chr14_40186489_40187081
          Length = 593

 Score =  364 bits (188), Expect = e-105
 Identities = 191/192 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatcagcctgtgagcagaagccagtactaaagaaaggcttatgctagcagaaatgctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatcagcctgtgagcagaagccagtactaaagaaaggcttatgctagcagaaatgctgt 260

                                                                       
Query: 61  cctcatggactaaaatgggaacatacaatacaaaaatgaaaaaaggctgtaggcatcctg 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cctcatggactaaaatgggaacatacaagacaaaaatgaaaaaaggctgtaggcatcctg 320

                                                                       
Query: 121 gaaggttatatgataagggagtaagctcagcaaatactttatcctttaaggaggggaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggttatatgataagggagtaagctcagcaaatactttatcctttaaggaggggaaag 380

                       
Query: 181 catgaccatcta 192
           ||||||||||||
Sbjct: 381 catgaccatcta 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)