BAC Information

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BAC

Clone NameMSMg01-320N07
Chromosome14 (Build37)
Map Location 50,336,576 - 50,336,759
singlet/doubletsinglet
Overlap gene3632451O06Rik
Upstream geneLOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream geneLOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320N07.T7 (MSMg01no320_n07.b1)MSMg01-320N07.TJ (MSMg01no320_n07.g1)
ACCAG439966AG439967
length701779
length of high quality
(start - end)
234 (118 - 351)184 (195 - 378)
definitionCHROMAT_FILE: MSMg01no320_n07.b1 PHD_FILE: MSMg01no320_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:26 2005CHROMAT_FILE: MSMg01no320_n07.g1 PHD_FILE: MSMg01no320_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCACATTTCAAAGAGGATCCGCGGAATTCCTGAT
TCCCCAAAAACTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTC
CTCTATTCCCAAAGAGATGACCATGTGGTATTTGGCTTTGAGTTTGTTTA
TATAATGAATTAAGTTGAGGGATTTCCATATATTAAACCATCCCTGCATC
CCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGTTTTAATGTGTTC
TTGGATTCGGATAGCAAGAATTGTATTGAATATTTTTGCATTGATATTCA
TAAGGTAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGTT
TTAGGTATCAGAGGAATTGTGGCTTCATAGAATGAGTTGGGTAGAGTACC
TTCTACTTCTATTTTGTGTAATAGTTTGTGCAGAACTGGAATTAGATCTT
CTTTGAAGGTCTGATAGAAGTCTGCACTAAACCCATCTGGTCCTGGGCTT
TTTTTGCTTGGGAGACCATAAATGACTGCTTCTATTTCTTTAGGGGATAT
GGGACTGTTTAGATAGTTAACTTCATCCTGATTTAACTTTGGTACCTGTT
ATCTCTCTAGAAATTTGTTCATTTCATTCCAGGTTTTCCAGTTTTTTTGA
GTATAGCCTTTTGTACAAGGATCTGATGGAGTTTTGGATTTCTTCAAGGT
T
AACCCGAATAATACTCGACAAATAATAAAACAACCNNNCCCCCTTTTAAT
TNNNCCATTAGTAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCCCAAAAGGAATTCACTGGAATACAGC
TTGAAAATGTTTTAACCTTTTATTATTTCTTTCGAAAAAATAGATAAGAA
TATCAACCCACTGGACTTCTTGATCAACAGAGCAGAAAATGTCAGTGGTA
AGAGATTAAAAGCAAGAAACAAAAAAGGAAAAACATAACCAAAAAGAAAA
AAATGGCCACAGAGAATTGACAGTCTTCATTGTTATAAGAAATACTAGGT
TCTGAACTATGAACAATGCCATAATCATATTTTTATAATTTCACATTGTT
TTACAAAAATATCTGTCTTTATTTTATTTACCCCCCCCCCACATGATATA
TAATATAATATATAAACACTTATATTATATTATAAAAAATAAAATATATT
ATAGGAGAGTATATTATATTATATTATATTATATTATATTATACAAAAGG
GTTCATATTCTAGATTTCCCAGTGGAAGCAAGGAGGTAGACCTAAAAGAA
TCAGATGTTTGAACTCAGGAGTTATCTGCAGAGATATGATTTAATTCAAT
GATTAATTAAGCTTCTTTGGTGGTCAGGAAATTGCTGGAAAAAGGATAGA
GAGATGGATACAGTCCATGTCTGTCAAAGGCAAGCGTTCAAGGGAAAGTC
CTATCATTGATAAGTCAGAGGAGCTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_n07.g1 MSMg01no320_n07.g1 CHROMAT_FILE:
MSMg01no320_n07.g1 PHD_FILE: MSMg01no320_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:26 2005
         (184 letters)



>mm_chr14_50336376_50336959
          Length = 584

 Score =  356 bits (184), Expect = e-103
 Identities = 184/184 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagaatatcaacccactggacttcttgatcaacagagcagaaaatgtcagtggtaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagaatatcaacccactggacttcttgatcaacagagcagaaaatgtcagtggtaagag 260

                                                                       
Query: 61  attaaaagcaagaaacaaaaaaggaaaaacataaccaaaaagaaaaaaatggccacagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaaaagcaagaaacaaaaaaggaaaaacataaccaaaaagaaaaaaatggccacagag 320

                                                                       
Query: 121 aattgacagtcttcattgttataagaaatactaggttctgaactatgaacaatgccataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgacagtcttcattgttataagaaatactaggttctgaactatgaacaatgccataa 380

               
Query: 181 tcat 184
           ||||
Sbjct: 381 tcat 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)