BAC Information

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BAC

Clone NameMSMg01-320N23
Chromosome14 (Build37)
Map Location 31,628,987 - 31,629,272
singlet/doubletsinglet
Overlap geneSfmbt1
Upstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
Downstream geneTmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320N23.T7 (MSMg01no320_n23.b1)MSMg01-320N23.TJ (MSMg01no320_n23.g1)
ACCAG439997AG439998
length731739
length of high quality
(start - end)
319 (36 - 354)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no320_n23.b1 PHD_FILE: MSMg01no320_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:29 2005CHROMAT_FILE: MSMg01no320_n23.g1 PHD_FILE: MSMg01no320_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATTC
CCAGCAACCACATGGTGGCTCACAACCATCTATTATGGGATTCGATGCAC
TTTTTATTTGCGCCCCTAAAGATAGCTGCAGTGTACTCATATAAATAAAA
AATAAATCTTAAAAAAAAAAGAAACATACCTTAGTGACAAAGAGAGATAC
TACCTCAGAGTAAAAACACTAGAAAAAGTTTTCCAAGCAAAGGATCCCAA
GAAACAAGCTGGAGTTGCCATTCTAATATCCATTAAAATAGACTTTCAAC
CATAAATTATTAAACAAAATAGGAATGGACACTTCATATTCATCAAAGGA
AATATTCNCTCGACACCCCCCCACTTCTGAACATCTATGCCATAAATGCA
AGGGCACCACATTTGTAAAAGAACCACATTTGTAAAAGAAACTTTACTAA
AGCTCAAAACATCACACATTAATAGTGGGAGACTTCAACACCCTACTCTC
ACCAATGGACAGGTCATTGAAACAGAAACTAAACAGAGATGCAGTGAAAC
TAACAGAAGTTATGAACCAAATGGACTTAACAGATATCTACAGAGCATTT
CACCCCAAAACAAGAAAATAAACCTTCTTCTCAGCACCTCATGGAACCTT
CTCCAAAATTGATCATATAATCCGACACAAAAAAAGACTCTATAGATACA
AGAAGATTGAAATAATGCCATGCATTCTATC
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAATACTGATGTCCTCGTCTGTCCC
CTGTGGGCACAGCATGGTACGTGCGCACACAAACACAAGTAAATTACAAA
TAAGTAAAGTGATCCTCAAAGTTGTGATCTTCATGAGCCACAAGCATTAT
TTGGAGATTATTAGTGAAGGGACATTTTCAGAGAAGCTGCTGGTTTTAAG
TAAAAAAAAAAGTTTTGTTGCTAGCTTATTTATAACTTGCTATTTGGTTT
AAGGAAAAGTGTTGTTTAAATAATTTTTTATAATATGTGTAATTTTCTAG
AAACAAATTATTTANCTTGCTCCTNAACATTNACCTGTCTTGTTTAGCAA
TTTGCTCTGTACATAAATGTACAATAAAAAAAAAAAATAATACTAGAGGC
TATTATAATTAACTTTATAATAATTGGTAGAGTGCCTGCCTAGCATGCAC
AAAGCCCTGAGTTCAACCTTTAGTACAGCATAAAACGAGGTATGGCATCA
CTCATACTCCTGTAGCCCCAGTACTTGGGAGGTGGGGCAGGAGACCAGTT
CAAAGCTAGTGTGGGCAACAGGAAACCACTCTAAAACAAAACTAAGTTAC
ATTTTACACTGGACTTTTTAAATGTCCCATTAACAGGAGCAATAGAAGAT
TTATTTCTCATGGTCTCATTGGAAATAGTATTTGCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_n23.g1 MSMg01no320_n23.g1 CHROMAT_FILE:
MSMg01no320_n23.g1 PHD_FILE: MSMg01no320_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:29 2005
         (288 letters)



>mm_chr14_31628787_31629472
          Length = 686

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatactgatgtcctcgtctgtcccctgtgggcacagcatggtacgtgcgcacacaaaca 60
           ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 caatactgatgcccttgtctgtcccctgtgggcacagcatgg-acgtgcgcacacaaaca 259

                                                                       
Query: 61  caagtaaattacaaataagtaaagtgatcctcaaagttgtgatcttcatgagccacaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caagtaaattacaaataagtaaagtgatcctcaaagttgtgatcttcatgagccacaagc 319

                                                                       
Query: 121 attatttggagattattagtgaagggacattttcagagaagctgctggttttaagtaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attatttggagattattagtgaagggacattttcagagaagctgctggttttaagtaaaa 379

                                                                       
Query: 181 aaaaaagttttgttgctagcttatttataacttgctatttggtttaaggaaaagtgttgt 240
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 aaaaa-gttttgttgctagcttatttataacttgccatttggtttaaggaaaagtgttgt 438

                                                           
Query: 241 ttaaataattttttataatatgtgtaattttctagaaacaaattattt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttaaataattttttataatatgtgtaattttctagaaacaaattattt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 686
Length adjustment: 9
Effective length of query: 279
Effective length of database: 677
Effective search space:   188883
Effective search space used:   188883
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)