BAC Information

Click to search

BAC

Clone NameMSMg01-321B03
Chromosome14 (Build37)
Map Location 36,206,240 - 36,206,546
singlet/doubletsinglet
Overlap geneGrid1
Upstream geneMmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321B03.T7 (MSMg01no321_b03.b1)MSMg01-321B03.TJ (MSMg01no321_b03.g1)
ACCAG440138AG440139
length757740
length of high quality
(start - end)
369 (48 - 416)341 (75 - 415)
definitionCHROMAT_FILE: MSMg01no321_b03.b1 PHD_FILE: MSMg01no321_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:43 2005CHROMAT_FILE: MSMg01no321_b03.g1 PHD_FILE: MSMg01no321_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGAATCCGCG
GAATTCCACCACTTTTTTCCCTAATCCTTTTTTCAATTTCATTAATTAAC
TCAAATGGTTTGGCGAGTCAAATTCATTTAAAAACACAGAAAAAGGATGA
AGAGAATCTTCATTGGTCAAGAGCATGCATTGAGATGGCAGAGACCTTCA
GTTAAGTTCTCAAACCCACATCAGTTATATCATGACTGCCTTCAATTCCA
TTTCTAGGGGATCCTCAATGCCTCTGCCCTCCATGGTCAACTGAAAACAC
AGGCACACAGAGAAAGAAACACGGACGCACAGTGTTCAACAAGCATGCTT
ACTATATGATCAGAAAATAAACTTCATAAAGAGATGTGGAAATAGGTGAA
CAGAACCCTGAAGTCCCTCTTCCTCCCCCCTTTGCTGGAGTTTGTAGCTG
TGCTAGAGTATGTAGATGTGCTCTGGTACTGCAGGCTGAAAATTGATCAG
CAGTTCCATTAAGCCTTATGTAGCATTGCATTATTGTTATATTCAGCAAC
ACTTATGTTGTGATGAATGCTAGCCACCAACCGCATTCTTTATGGCAACC
GATAGGCATTTATTCTGGTAAAGCCCTATAGGTCTGACCCTGTATTTCTT
CCCTTGCTTTGGCTGCCCTCTCGTGTTTCCATTTTGACCCTATTCTATCA
CCGTTTCACATAAGTTATTGATCCCACCTTTTTGATTTTCTATTTTTTCC
CCCGCAT
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAACAGAGGGATCTCGAATGTCCCA
GAATCACAGAAATGCTCAACATCCTCAGTCATCAGGGAAATTCAAATCAA
AACAGCCCTGAGATTCCACCTGACACCTGTCAGGATGGCTAAGATCAAAA
ACTCAAGGGACAGCATATGTTGGAGAGGATGTGGAGAAAGAAGAACACTC
CTCCATTGCTGGTGGAAGTGCAAACTTGTACAACCACTCTGGAAATCAAT
CTGGTAGTTTCTCAGAAAATTGGAAATAGTTCTATTTGAAGATTCAGCTA
TACTACTCTTGGGCATATACCCAAAAGATGCTCCATCATACCACAAGGAC
AAATGCTCCACTCTGTTCTTACCCCCCCTATTTGTAATAGCCAGAAACTG
GATTGAACCCATATGTTCTTCAACAGAGGAATGGATACAGAATATGTGTT
AAATTTACTCCATATAGTACTACTCAGTTATTAAAAACGACGAATTCATG
AACTTTGTAGGCTAATGTATGGAACTAGATAATATGAACCTGACTCAGGT
AACCCAATAAGACAGGTACGCTATGTGCCTCCTGATATATGTAGGAATAC
CCGGCGGTGTTCTATAAATATAGAAGGCATGAGAGAAGGTATTCCCTTGG
CGGAGGTATGGATGATACACCATTTGTGGTAAAATCTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_b03.b1 MSMg01no321_b03.b1 CHROMAT_FILE:
MSMg01no321_b03.b1 PHD_FILE: MSMg01no321_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:43 2005
         (369 letters)



>mm_chr14_36205778_36206546
          Length = 769

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 63  ttggcgagtcaaattcatttaaaaacacagaaaaaggatgaagagaatcttcattggtca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ttggcgagtcaaattcatttaaaaacacagaaaaaggatgaagagaatcttcattggtca 710

                                                                       
Query: 123 agagcatgcattgagatggcagagaccttcagttaagttctcaaacccacatcagttata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 agagcatgcattgagatggcagagaccttcagttaagttctcaaacccacatcagttata 650

                                                                       
Query: 183 tcatgactgccttcaattccatttctaggggatcctcaatgcctctgccctccatggtca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tcatgactgccttcaattccatttctaggggatcctcaatgcctctgccctccatggtca 590

                                                                       
Query: 243 actgaaaacacaggcacacagagaaagaaacacggacgcacagtgttcaacaagcatgct 302
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 589 actgaaaacacaggcacacagagaaagaaacacggacacacagtgttcaacaagcatgct 530

                                                                       
Query: 303 tactatatgatcagaaaataaacttcataaagagatgtggaaataggtgaacagaaccct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tactatatgatcagaaaataaacttcataaagagatgtggaaataggtgaacagaaccct 470

                  
Query: 363 gaagtcc 369
           |||||||
Sbjct: 469 gaagtcc 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)