BAC Information

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BAC

Clone NameMSMg01-321I08
Chromosome14 (Build37)
Map Location 18,777,408 - 18,778,089
singlet/doubletsinglet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321I08.T7 (MSMg01no321_i08.b1)MSMg01-321I08.TJ (MSMg01no321_i08.g1)
ACCAG440467AG440468
length736738
length of high quality
(start - end)
322 (46 - 367)657 (77 - 733)
definitionCHROMAT_FILE: MSMg01no321_i08.b1 PHD_FILE: MSMg01no321_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:17 2005CHROMAT_FILE: MSMg01no321_i08.g1 PHD_FILE: MSMg01no321_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCTTTCCCTTTGTATCCCCTTGATCTCCTTTTGTTGTCTAATT
GCTCTGGCTAGAACTTCAAGCACTATATTGAATAGGTAGTGAGAGAGTGG
GCAGCCTTGCCTAGTCTCTGATTTTTAGTTGGATTGCTTCAAGTTTAAAT
CCATTTAGTTTGATGTTGGCTACTGGTTTGCTGTATATTGCTTTTACTAT
GTTTAATTATGGGCCATGAATTCCTGATCTTTCCATGACTTTTATCATGA
AGGGGTGTTGAGTTTTGTTTTATACTTTCTCAGCATCTAATGAAATTATC
ATGGGTTTTTTTTTTCCCTTGACTTGCCCACATAGTGGATTACGTTGAAG
GATTTCCATATCCCCCACCAAAAAAAGAATCCCAGGGATGAGGGCTACTT
GATCATGACGGATGAATGTTTTGCAGGAATTTTATTGAGTATTTTGGCAT
CAATAAGGAAAATTGGCCTGAAGTTCTCTTTCTTTGTTGAGTCTTTGTGT
GGATTAGGTATCAGAGAAATTGTGGCTTTATAGAATGATTTGTTTAGCAT
CACTTCTGTCTCTATTTTGTGAAATAGCCTGAAGGAGTATTTTTACCTCA
TTTTTTTCGAATGTCTGATATAAATCCGGAATCCCATCCATTTTTCCTTC
TGTCATTTTTTTTCCTGTATAACGTAATAATGTCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATCTCTGTACCCCATTTTAAT
AGGGTTATTTGATTTTTCTGGAGTCCATCTTCTTGAGTTCCTTATATATA
TTGGATATTAGTCCCCTATCTGATTTATGATAGGTAAAGATCCTTTCCCA
ATCTGTTGATGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGA
AGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTTTCGATTTTACAGGC
CAATCCATACAATAATTCTTTCTTTCTTTCTTTCTTTTCTTTTTCTTTTT
TCTTTTTCTTCTTTTTTTTTTTTTGGCATTCTGGGGTTAAATATACTTTT
TAAATTTTTTTTACCACCCATTTTCTTCATTTACATTTCAAATGCTATCC
CAAAAGTCCAGTATACCCTCCCCCTGCCCTGCTCTCCTACTCACTCACTC
CCACTTCTTGGCCCTTGCGTTCCCCTGTACTGGGGCATATAAAGATTGCA
AGACCAAGGGGCCCCTCTTCCCAATGATGGCTGACTAGGCCATCTTCTGC
TACATATGCACTAAATTTCAATGCAAAATGTTTTTCTATCTCTTAAAAAT
GCATTTCAGGTTAGGCATAGAGCATAAAGTATTCTCCTTTCTTAGAGACT
GTATTAATTTTCAGTGTGTACTACAACAATTTGACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_i08.g1 MSMg01no321_i08.g1 CHROMAT_FILE:
MSMg01no321_i08.g1 PHD_FILE: MSMg01no321_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:17 2005
         (657 letters)



>mm_chr14_18777233_18778289
          Length = 1057

 Score = 1112 bits (575), Expect = 0.0
 Identities = 645/683 (94%), Gaps = 27/683 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatctctgtaccccattttaatagggttatttgatttttctggagtccatcttcttga 60
           ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 176 tttatctctgtaccccattttaataaggttacttgatttttctggagtccatcttcttga 235

                                                                       
Query: 61  gttccttatatatattggatattagtcccctatctgatttatgataggtaaagatccttt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gttctttatatatattggatattagtcccctatctgatttatgataggtaaagatccttt 295

                                                                       
Query: 121 cccaatctgttgatggcctttttgtcttattgacagtgtcttttgccttacagaagcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cccaatctgttgatggcctttttgtcttattgacagtgtcttttgccttacagaagcttt 355

                                                                       
Query: 181 gcaattttatgaggtcccatttgtcaattttcgattttacaggccaatccatacaataat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcaattttatgag-tcccatttgtcaattttcgattttacaggccaatccatacaataat 414

                                                                       
Query: 241 tctttctttctttcttt-ctttt-ctttttcttttttctttttctt-----------ctt 287
           ||||||||||||||||| ||||| ||||||||||||||||||||||           |||
Sbjct: 415 tctttctttctttcttttctttttctttttcttttttctttttcttttttcttttttctt 474

                                                                       
Query: 288 ttttttttttt-------------ggcattctggggttaaatatactttttaaatttttt 334
           |||||||||||             || |||||||||||||||||||||||||||||||||
Sbjct: 475 ttttttttttttttttttttttttggtattctggggttaaatatactttttaaatttttt 534

                                                                       
Query: 335 ttaccacccattttcttcatttacatttcaaatgctatcccaaaagtccagtataccctc 394
           |||  |   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ttattaaatattttcttcatttacatttcaaatgctatcccaaaagtccagtataccctc 594

                                                                       
Query: 395 cccctgccctgctctcctactcactcactcccacttcttggcccttgcgttcccctgtac 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cccctgccctgctctcctactcactcactcccacttcttggcccttgcgttcccctgtac 654

                                                                       
Query: 455 tggggcatataaagattgcaagaccaaggggcccctcttcccaatgatggctgactaggc 514
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tggggcatataaagattgcaaaaccaaggggcccctcttcccaatgatggctgactaggc 714

                                                                       
Query: 515 catcttctgctacatatgcactaaatttcaatgcaaaatgtttttctatctcttaaaaat 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 715 catcttctgctacatatgcactaaatttcaatgcaaaatgtttttctatctcttagaaat 774

                                                                       
Query: 575 gcatttcaggttaggcatagagcataaagtattctcctttcttagagactgtattaattt 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gcatttcaggttaggcatagagcataaagtattctcctttcttagagactgtattaattt 834

                                  
Query: 635 tcagtgtgtactacaacaatttg 657
           |||||||||||||||||||||||
Sbjct: 835 tcagtgtgtactacaacaatttg 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)