BAC Information

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BAC

Clone NameMSMg01-321I21
Chromosome14 (Build37)
Map Location 40,515,755 - 40,516,330
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3
Downstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321I21.T7 (MSMg01no321_i21.b1)MSMg01-321I21.TJ (MSMg01no321_i21.g1)
ACCAG440493AG440494
length753753
length of high quality
(start - end)
323 (37 - 359)685 (69 - 753)
definitionCHROMAT_FILE: MSMg01no321_i21.b1 PHD_FILE: MSMg01no321_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:19 2005CHROMAT_FILE: MSMg01no321_i21.g1 PHD_FILE: MSMg01no321_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGA
TCTTTCCAAGACTTTCATCATGTAGGGGTGCTGGAATTTGTCAAATGATT
TCTCAGCATCTAATGACCCGATGATATAGTTTTCATCTTTGAGTTTGCAT
AGCGGATAACTTTGATGGATTTCTGTATATTGAACCATCCCTGCATCACT
GGGATGAAACCTACTTGATCATGATGTATGATCATTTTGATGCGTTCTTG
TATTTAGTTTGTGAGAATTTTATAGAGTATTTTTGAATTGATATTCATAA
GTAAGATTGGTCTGAAGTTTTCTTCTTTGCTTGCTCTTTGTGTAGTTTAG
GTATAAGTGTAATTGTGACTTCATACACTGAATTGGGTAGTGTACCTTCT
GTTTCTATGTTCTGGAATAATTTGAGTATTATTGGTATTAGATCTTTTTG
AAGGACTTATAGAATTCTGCACTAAACCCATCTGGACCTGAGCATTGTTT
TAAATGCTAGACTGTTAATGACTGCTTGTATTTCTTTGTGGGTTAGGGGA
CAATTAGATGGATTATCTGATCTTGATTTAACTTTGGTACCTGGTATCAA
AGAAAATTGTCCATTTCATCCAGATTTTCCAGTTTTGTTGAGTATAGTTT
TTGTAGTAGGATCTTATGATTTTTTAGATTTCCTTAGTTTCTGCAGTTAT
GTCTTCATTTTAGTTCCTGATTTTGTTAATTTGGATACCATATCTGCGCC
CTC
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACATCAAAGGAGGGAATAATTATAATGTTAA
AGCCTTCTAAGAAAGTGTAAGAATATCTACGTGATAGTTTCATAAATATT
ACTATGACTTTGACATCAAATTGAAGAAGAGCAATGCAATTAAATAAATC
ATGCATTAATTTCAGTCATTATTATAGCCCTGAAAATCCAAAGTAGTAAA
ATCATACTTAGGAGAAATTCAATGAACACTTATTTATTGCTTGAATTAGT
TTGTTCATGTCATGTTATAGCAAAGTATAAAGCTTGGCCTTAGACACAGT
GGTCTGATATAATATTAGAATATAATTTGGGCAAAAGGGAAAGTTTTGTG
TTCACATCATTCAAAGAAATTAAAGAAACCCCTGACTGTCTGTAGTTTTT
TTTAAATTAAATATTTACTTTATTTACATTCCAAACATTGTCTCCTTTCC
TGGTTTCCCCTCTGAAAACCCATTATCCCCTCTCCCCTACCCTGCTCACC
AACCCACCCACACACACTTCCTGACCCTGGCATTCCCCTACACTGTGGCA
TAGAGCCTTTGCAGGACCAAGTGCCTCTCCTCCCATTGATGACCGACTAG
GTCATCCTCTGCTACATATGCAGCTGGAGCCATGAATCCCACCATGTGTA
CTATTAAGTTGGTGATTTAGTCCCTGGTAGTTCTAGGGGTATGGTTAGTT
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_i21.g1 MSMg01no321_i21.g1 CHROMAT_FILE:
MSMg01no321_i21.g1 PHD_FILE: MSMg01no321_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:19 2005
         (685 letters)



>mm_chr14_40515755_40516838
          Length = 1084

 Score =  988 bits (511), Expect = 0.0
 Identities = 561/579 (96%), Gaps = 5/579 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatcaaaggagggaataattataatgttaaagccttctaagaaagtgtaagaatatct 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 576 cacatcaaaggagggaataattataatgttaaaaccttctaagaaagtgtaagaatatct 517

                                                                       
Query: 61  acgtgatagtttcataaatattactatgactttgacatcaaattgaagaagagcaatgca 120
           || |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 516 acatgatggtttcataaatgttactatgactttgacatcaaattgaataagagcaatgca 457

                                                                       
Query: 121 attaaataaatcatgcattaatttcagtcattattatagccctgaaaatccaaagtagta 180
           ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 456 attaaataaatcatgtattaatttcagtcatcattatagccctgaaaatccaaagtagta 397

                                                                       
Query: 181 aaatcatacttaggagaaattcaatgaacacttatttattgcttgaattagtttgttcat 240
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 396 aaat-atacttaggagaaattcaatgagcacttatttattgcttgaattagtttgttcat 338

                                                                       
Query: 241 gtcatgttatagcaaagtataaagcttggccttagacacagtggtctgatataatattag 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtcatgttatagcaaagtacaaagcttggccttagacacagtggtctgatataatattag 278

                                                                       
Query: 301 aatataatttgggcaaaagggaaagttttgtgttcacatcattcaaagaaattaaagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aatataatttgggcaaaagggaaagttttgtgttcacatcattcaaagaaattaaagaaa 218

                                                                       
Query: 361 cccctgactgtctgtagttt--tttttaaattaaatatttactttatttacattccaaac 418
           || |||||||||||||||||  ||||  ||||| ||||||||||||||||||||||||||
Sbjct: 217 cctctgactgtctgtagtttcctttt--aattacatatttactttatttacattccaaac 160

                                                                       
Query: 419 attgtctcctttcctggtttcccctctgaaaacccattatcccctctcccctaccctgct 478
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 attgtcccctttcctggtttcccctctgaaaacccattatcccctctcccctaccctgct 100

                                                                       
Query: 479 caccaacccacccacacacacttcctgaccctggcattcccctacactgtggcatagagc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 99  caccaacccacccacacacacttcctgaccctggcattcccctacactggggcatagagc 40

                                                  
Query: 539 ctttgcaggaccaagtgcctctcctcccattgatgaccg 577
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  ctttgcaggaccaagtgcctctcctcccattgatgaccg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space:   724950
Effective search space used:   724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)