BAC Information

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BAC

Clone NameMSMg01-321L20
Chromosome14 (Build37)
Map Location 118,126,437 - 118,126,732
singlet/doubletsinglet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321L20.T7 (MSMg01no321_l20.b1)MSMg01-321L20.TJ (MSMg01no321_l20.g1)
ACCAG440630AG440631
length738735
length of high quality
(start - end)
658 (72 - 729)296 (75 - 370)
definitionCHROMAT_FILE: MSMg01no321_l20.b1 PHD_FILE: MSMg01no321_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:33 2005CHROMAT_FILE: MSMg01no321_l20.g1 PHD_FILE: MSMg01no321_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGAATCCGCGGA
ATTCTAGGGCATGTTTTCACTAATGACTCTGCATGTGATACAGGCACTAC
TCAAAAACAGCCAGTCACAGCGTTACAACTCCTCTCTGGGGCAACCTTGA
AAAACAAAAGTCAAGGGAAATCTTCACAGTGGACAGCAACTGGGGCAGAG
TACATGACCATATGTTTTGTTTGGAAGGAGAGATGCCCAGATGGGCAATT
GTTCACTTACTCTGGGCCAATGGATTGGCTGAATGGTAAAGGACTGGGAA
AGGGCAAGATTGGAAAATTGGTGAGAAAGACATCTGGGAAAGAAGTATGT
GTGGATGGATCTCTCCAAATGGGTAAAGGGTTTGGAGATTCTGGTGTCTC
ATGTAAATGTTCAAAAGGTGACTCCCCCGCAGAAGCTCAACAACCAAGTA
GATAAGATGATACATTTTGTGGACAGTCAGCCTCTTTCCCAACCAAATCT
GTTGTTGCCCAATGGGCACATAAACAAGGTACTTGGGGTGGCCTGTGGGG
GTGATGCCTTGGCTTGACAGCATGGGCTTCCTCTCACCGAGGCTAGCCTG
GCTGCAGCTGCTGCTGAGCATCAGATATACCAAGAGCAGAGACCAACACT
GAGTCCCAGATATGGCACCATCCCATCAGGGTGACTAGCTAGTGACTTTG
TGGACCACATTGGACCACTTCCTCTGTGGATAAGATAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACTGATATGGTACAAACCCTGCAAA
ACCCTTCATCACAGGGTGTCCACAGACCCTCTTATCTTTTTTTCTTGGCA
TTCACGGACTTTGAGTAGCATGAGCTGTATTACAGATGAACCTCATCTAA
TGAAAGCTAGCATGCAAAAAAGTTAAGTCAGTGAATTAATTATATCTGAG
ATTTGACTCACACATCAGATGATTAAATATGTGCATTTGAAAGAGTCCCC
GAAGATATTGTAGTTACTTTAAATAATTGTCCAGGGCCTTTTGGCTGAAG
TGACTTTCCTCATGTAGATTGTTTTTGTTATCCTACTTTCTCAGTGTCTT
AATTTTGTCTGTTTCTGCATTCCCCCCCGCCTAATTCAGTAAACATTTAT
TAGAACAGAATCTACAGAAAAACAGGGCTAGAACCTGCAGGGAACGGGAC
AGTTATAGAGACAGCCCACTCCCCTTTAGAGGTTGACTATGGGACCTGGA
GACAGACTCACATGGGTAGCGTGTTGGCCATTAAATCAAACTCCAACCCA
AACACAGATGACCACGATTCAATTTTGACCTTAACAGTACACATCAGGTC
AGGCCCCGAGTTAACAAGGAGGAGAAAGAAGGCTGTGTTCACATGCTGTC
AGGAATCCAGCTCTGGCGCTCTTCTCCAATCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_l20.g1 MSMg01no321_l20.g1 CHROMAT_FILE:
MSMg01no321_l20.g1 PHD_FILE: MSMg01no321_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:33 2005
         (296 letters)



>mm_chr14_118126237_118126932
          Length = 696

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgatatggtacaaaccctgcaaaacccttcatcacagggtgtccacagaccctctta 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 201 cactgatatggtacaaaccctgcaaaacccttcgtcacagggtgtccacagagcctctta 260

                                                                       
Query: 61  tctttttttcttggcattcacggactttgagtagcatgagctgtattacagatgaacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttttttcttggcattcacggactttgagtagcatgagctgtattacagatgaacctc 320

                                                                       
Query: 121 atctaatgaaagctagcatgcaaaaaagttaagtcagtgaattaattatatctgagattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctaatgaaagctagcatgcaaaaaagttaagtcagtgaattaattatatctgagattt 380

                                                                       
Query: 181 gactcacacatcagatgattaaatatgtgcatttgaaagagtccccgaagatattgtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gactcacacatcagatgattaaatatgtgcatttgaaagagtccctgaagatattgtagt 440

                                                                   
Query: 241 tactttaaataattgtccagggccttttggctgaagtgactttcctcatgtagatt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactttaaataattgtccagggccttttggctgaagtgactttcctcatgtagatt 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)