BAC Information

Click to search

BAC

Clone NameMSMg01-321P13
Chromosome14 (Build37)
Map Location 13,290,679 - 13,290,970
singlet/doubletsinglet
Overlap geneCadps
Upstream geneLOC667059, LOC100041996, Ptprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321P13.T7 (MSMg01no321_p13.b1)MSMg01-321P13.TJ (MSMg01no321_p13.g1)
ACCAG440799AG440800
length740741
length of high quality
(start - end)
249 (72 - 320)292 (69 - 360)
definitionCHROMAT_FILE: MSMg01no321_p13.b1 PHD_FILE: MSMg01no321_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:49 2005CHROMAT_FILE: MSMg01no321_p13.g1 PHD_FILE: MSMg01no321_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAA
TTCAACAACTCTCTCAAAGAAATACAGGAGAACACTGCTAAAGAGTTACA
AGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTA
AAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAA
CAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGA
CCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGC
TGGAGATAGAAACCCTAGGATTATGTAAATCTGGAACCATAGATGCCAGC
ATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGA
CTCCATAGAGAACATCGTTCTTCCCACCCAAAGAAAATGGAAAATGCAAA
AAGATCCTAACTCAAAACATTCAGGATATCCAGGACACCATGAGAAGACC
AAACCTACGGATAAAGGAGTGGAGAGAATGAAATTTTCAATCAAGGACCG
CAACATCTTCAAAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGA
GATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACC
AGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAATGCACTA
AATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGAAATTCTGGCTGACCATGGCTGGAACTGGGGTGCCA
TGAGACAGTGGGATTGACCCAATGGCGAGGCAGGAGAGAAGGTAAAGGGG
TGCGGTGGACCAGCACTCACGTTCATACTGTAGTGCAGTGGATATAATTG
ATAATTTGTCACATTTCCCAATGGAAAGGAAAGGAGTGTGCTCATCAAAA
AACACTGATCACAGTGAAAGATAGCTGACGCACTTGGTCCTCTGACCAAT
ACACACATGAAGCCACATATTGTACAGCACCTTCTAAATGTGTGTACGTA
GTAGATTGCATTCCTAAATACATTTATACAGTGTGTACATGTATGGAATT
TTCAAAGAATAACCACCCCCCCCGAACAACGAAAACTACCAAAATACTTA
AGAATATAAGTGGTGCAGGGCATTAGCTGTGCCCACTTTTATTTGTAACT
TACTGTCAAGGGAAGATTTCTTCAGGCAGACATTAGACACCAAATGGGAA
AGGAAGGCTCACTGATTTGAATGTGTTGTAATAGTGATATATAGAAATTG
AATGTCTTCCAACTGCTACTTCTAAAGACAGGAATTCATACAAGGGGTGT
CAGAATGGATGGGAAACATGAAGAACTCATATAGAAGAATGATTATCCCC
AGGGAATTTTGTGGAATGCTGAAGGAAAATGGATGCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_p13.g1 MSMg01no321_p13.g1 CHROMAT_FILE:
MSMg01no321_p13.g1 PHD_FILE: MSMg01no321_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:50 2005
         (292 letters)



>mm_chr14_13290479_13291170
          Length = 692

 Score =  511 bits (264), Expect = e-149
 Identities = 285/292 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggctgaccatggctggaactggggtgccatgagacagtgggattgacccaatggcga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 201 tctggctgaccatggctggaactggggtgccatgagacagtgggattgatagaatggcga 260

                                                                       
Query: 61  ggcaggagagaaggtaaaggggtgcggtggaccagcactcacgttcatactgtagtgcag 120
           |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 261 ggcaggagaggaggtaaaggggtgcggtggaccagcgctcacgttcatgctgtagtgcag 320

                                                                       
Query: 121 tggatataattgataatttgtcacatttcccaatggaaaggaaaggagtgtgctcatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tggatataattgataatttgtcacatttcccaatggaaaggaaaggagtgtgctcatcag 380

                                                                       
Query: 181 aaaacactgatcacagtgaaagatagctgacgcacttggtcctctgaccaatacacacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacactgatcacagtgaaagatagctgacgcacttggtcctctgaccaatacacacat 440

                                                               
Query: 241 gaagccacatattgtacagcaccttctaaatgtgtgtacgtagtagattgca 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagccacatattgtacagcaccttctaaatgtgtgtacgtagtagattgca 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)