BAC Information

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BAC

Clone NameMSMg01-322D07
Chromosome14 (Build37)
Map Location 53,082,291 - 53,082,815
singlet/doubletsinglet
Overlap geneOlfr1508
Upstream geneEG638695, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509
Downstream geneOlfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322D07.T7 (MSMg01no322_d07.b1)MSMg01-322D07.TJ (MSMg01no322_d07.g1)
ACCAG440965AG440966
length757748
length of high quality
(start - end)		320 (45 - 364)526 (72 - 597)
definitionCHROMAT_FILE: MSMg01no322_d07.b1 PHD_FILE: MSMg01no322_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:07 2005CHROMAT_FILE: MSMg01no322_d07.g1 PHD_FILE: MSMg01no322_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAAGGGTTCCCCAAAACCTCCTATTTCCTGAGGTTGCCTGTTTAC
ATTCTTTCTGCTGGCCCTTGGCCCTTCAGTCCTTTTCCCTCATCCAATAC
CAGATCAGGTTCCCCTCTAACCCCCCACTCCTCCCTCACCCTGTCCACTC
TCCTTCCCAAGTCCCTCCCTCCCTCCCCACTTGTGATTGATTTCTTCTCT
CTCCCAAGGTAAAAACCTGTACTGCAGAAAACTGAAAAACATAAAGGAAA
TGTACTAATTCATAGATTCATACAAACAACTAAAGGTAAATCAAAAATAC
ATAACTTAAACAGACTAAACGTGATTAACAGCCTTCCAACAAAAAAAGGC
TCAGGCCCAGATGGATTCACCATAGAATTCTACCAGACTAAAAAAAACAA
AGCAAAACAAAACAAAACAAAAACAAAAACAAAACAATACAAAACAAAAC
AAACAAACAAAAAAAAACCTTCTCAAGTGACTTAGAAAATAAAAAATAGA
AGGAACACTTCTAAACTCCCTATTTAAATCCATCATCACTATAATACCAA
AACCGGGGAAAGGCTAAACAAAGACATGGATTTGCAGGGCAATATCCCTC
ATAACCATGATTACACCAGCAGGTGTAAAAAGATTCTTTGATAATATCTA
AGAGACTTTCTTGATAAAAGTCCTGAGAAAGTATGGCTGAGGAACCATAC
CTTATTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAATTGGTATTTTCTCCCAGTTCTTGGA
ACAATAGCGTGTTGGTGATCTGCTTTGAAATCCAATCTTGTGATTTTTAT
TTATTTTTTTTTGTCAAGTAGGGAAGTGAACCCAGGGTCTTCTATATGCC
AAGTACACATTCTGCACTGAGCTACATTCTGGGTCCCCTGAGTTCTGTCT
ATGATTTTGTAGCAGGGTTAATGTTCAGCATGGTATTTTCTCAGAGTAAG
CTTTTGTTTTGTTGTAATTAGATGAACATGTAACTAGTGCTGTTGAGATA
ATTAACTAAGTCCTCACTCACTATGATAATGTCTACAATGTGGAAGATGT
TACCAGTCACAGCATCCACCTTGATTGTTAGATGTAGGACCAGAAGAAAA
TGTTATAAGTCATATCATCTCGTAAATATAATAGTTGCTGCTTTGGTTTG
GATCATCAAGAATCCTAAGGGCTTATCATTTTCACTTTTCTCTTCTCTTA
ATTAACTTGTTTAAGGCACTCTTCATGTCCTCATTCCTAAGGGTGTAGAT
AATGTGATTCAGTAGAGGGGTAATAGCAGCGAAAAATACAGATACAACCT
TGTCCTCAGGAACGCTGGTGGATGTGCTTGAGTATATGAATATACAGCGT
CCCAGAAACAGAGTGACTACGGTGAGATGTGTGTTAAGGTGGACACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_d07.g1 MSMg01no322_d07.g1 CHROMAT_FILE:
MSMg01no322_d07.g1 PHD_FILE: MSMg01no322_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:07 2005
         (526 letters)



>mm_chr14_53082091_53083015
          Length = 925

 Score =  986 bits (510), Expect = 0.0
 Identities = 522/526 (99%), Gaps = 1/526 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaattggtattttctcccagttcttggaacaatagcgtgttggtgatctgctttgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaattggtattttctcccagttcttggaacaatagcgtgttggtgatctgctttgaaat 260

                                                                       
Query: 61  ccaatcttgtgatttttatttatttttttttgtcaagtagggaagtgaacccagggtctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaatcttgtgatttttatttatttttttttgtcaagtagggaagtgaacccagggtctt 320

                                                                       
Query: 121 ctatatgccaagtacacattctgcactgagctacattctgggtcccctgagttctgtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatatgccaagtacacattctgcactgagctacattctgggtcccctgagttctgtcta 380

                                                                       
Query: 181 tgattttgtagcagggttaatgttcagcatggtattttctcagagtaagcttttgttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattttgtagcagggttaatgttcagcatggtattttctcagagtaagcttttgttttg 440

                                                                       
Query: 241 ttgtaattagatgaacatgtaactagtgctgttgagataattaactaagtcctcactcac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 ttgtaattagatgaacatgtaactagtgctgttgagataattaactaagtcc-cactcac 499

                                                                       
Query: 301 tatgataatgtctacaatgtggaagatgttaccagtcacagcatccaccttgattgttag 360
           ||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||
Sbjct: 500 tatgataatgtctacaatgtggaagatgttaccagtcacagcatttactttgattgttag 559

                                                                       
Query: 361 atgtaggaccagaagaaaatgttataagtcatatcatctcgtaaatataatagttgctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgtaggaccagaagaaaatgttataagtcatatcatctcgtaaatataatagttgctgc 619

                                                                       
Query: 421 tttggtttggatcatcaagaatcctaagggcttatcattttcacttttctcttctcttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttggtttggatcatcaagaatcctaagggcttatcattttcacttttctcttctcttaa 679

                                                         
Query: 481 ttaacttgtttaaggcactcttcatgtcctcattcctaagggtgta 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttaacttgtttaaggcactcttcatgtcctcattcctaagggtgta 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space:   472140
Effective search space used:   472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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