BAC Information

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BAC

Clone NameMSMg01-322I18
Chromosome14 (Build37)
Map Location 108,488,456 - 108,488,807
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754
Downstream geneLOC668757, EG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322I18.T7 (MSMg01no322_i18.b1)MSMg01-322I18.TJ (MSMg01no322_i18.g1)
ACCAG441216AG441217
length748753
length of high quality
(start - end)
362 (387 - 748)352 (389 - 740)
definitionCHROMAT_FILE: MSMg01no322_i18.b1 PHD_FILE: MSMg01no322_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:32 2005CHROMAT_FILE: MSMg01no322_i18.g1 PHD_FILE: MSMg01no322_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAACTCTTTTCTGAAACTTAAGACAGTCTCTTGGCTCTCAAGATTT
TCCAACTGTACATCACAGGTACAACATGCCATGACATAAGCAATTCCAAA
TCAGAAGGGGAGAATGGAGTGAACAATAAATAATGATCAGAGCTAAGCAA
GACCAATAACCAAAATGGAAATTAAAAATCATGCCTGGTTATAGATCCAG
AAAGGAAAATAATGTATCATTCCTGGTAACTGAGGATCTTGATGAAATCA
CCTGAGCTCCAAATAGCCGGAGTGTTCTATCCATATCTAAGCCTTTAGAA
TCCATAACTTTTCTCTTTAATAGACTCCCCTCCGCCCATATGGCTTTTTT
TTTCAGATGTATTCATGCCATCACTTGAATATCTCTATTATCCCATGGTT
AATATTGTGACTTAGACTTCACCTTCACACTTTCATGCAGTAGTCTCACA
GGGCACCTCTGTAGCAACTTCAACATTGCTATATCTGGTTTGGCCTGAGA
AACTCATTAGAAACATGGTTAAATGTTTCATGGCTCATTCAACCTTGAAT
CTCCCATTTCTGTCAAACTAGTGGTCCATGGGTAACCGCCAATTTCTAAT
ACTAGTTTGGAACTCTGCTTATCTTGTGTCACTGTTGCAATTATTTTTGA
GTACCTTATGAGCTGCCCAAGTGAAAACACTTCTCTAGGAATTTGGTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGCTTGCACTTGTTAATTTAT
GTGTGTCTTTATTTGCAATTATTACAGAACAAGACTGATAACTTGAAAAG
TGCTTCAGATGGGAATGCTGAACGATTTGGAACAAGGAAAGGTTTAGAAT
TATTCAAATAGAGTAATATATTTGATATTCTAAAAAAATTATATTAAATT
AAAAAATAAAATAAGAGATTGAGGACTTCCTTTCAGGAATGGGCCTCATA
AAACGTAAATCAAAACTCAGAACTTGTCAATCTTGCTCATATATTGGTTT
TTTTTCAGTAGTTTCTACTTTTGACACCCACCACCCTTACCTGAAATAGC
TTTAATGGATCCTTGGTGATTCTAAATTAGTGGAATTTGAGTTTAAATAG
ATTATATAGAACAGTTTCAAGATGGAACTGTCAGAGTCAACACAGTAACT
TTGAAAGAGCTTGACTTGTTTCTGTGTGTCACTTCTAGTTCACCAAACCA
ATGATTTTCTACAGCTTTGAACAGCATTTCCACTATCAGTACAAGGTTTT
TGCTGACTTGGCATCGCTCTCCTTGCTGTGATTTAGCTACATCTTCTTTT
GCTTATGCTGCTGTATTGTTCAAATTTTATGTATAATGTATGAAGAAGCA
CAAATGTGTATTGTGTCTTTTATATTAAGAACTAAGTAAAAGACATTCCA
ATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_i18.g1 MSMg01no322_i18.g1 CHROMAT_FILE:
MSMg01no322_i18.g1 PHD_FILE: MSMg01no322_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:32 2005
         (352 letters)



>mm_chr14_108488256_108489007
          Length = 752

 Score =  665 bits (344), Expect = 0.0
 Identities = 350/352 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgaaatagctttaatggatccttggtgattctaaattagtggaatttgagtttaaat 60
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 552 acctgaaatagctttaatggatccttggagattttaaattagtggaatttgagtttaaat 493

                                                                       
Query: 61  agattatatagaacagtttcaagatggaactgtcagagtcaacacagtaactttgaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agattatatagaacagtttcaagatggaactgtcagagtcaacacagtaactttgaaaga 433

                                                                       
Query: 121 gcttgacttgtttctgtgtgtcacttctagttcaccaaaccaatgattttctacagcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcttgacttgtttctgtgtgtcacttctagttcaccaaaccaatgattttctacagcttt 373

                                                                       
Query: 181 gaacagcatttccactatcagtacaaggtttttgctgacttggcatcgctctccttgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaacagcatttccactatcagtacaaggtttttgctgacttggcatcgctctccttgctg 313

                                                                       
Query: 241 tgatttagctacatcttcttttgcttatgctgctgtattgttcaaattttatgtataatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgatttagctacatcttcttttgcttatgctgctgtattgttcaaattttatgtataatg 253

                                                               
Query: 301 tatgaagaagcacaaatgtgtattgtgtcttttatattaagaactaagtaaa 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatgaagaagcacaaatgtgtattgtgtcttttatattaagaactaagtaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)