BAC Information

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BAC

Clone NameMSMg01-322J10
Chromosome14 (Build37)
Map Location 36,220,907 - 36,221,153
singlet/doubletsinglet
Overlap geneGrid1
Upstream geneBmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322J10.T7 (MSMg01no322_j10.b1)MSMg01-322J10.TJ (MSMg01no322_j10.g1)
ACCAG441246AG441247
length733804
length of high quality
(start - end)
248 (48 - 295)102 (75 - 176)
definitionCHROMAT_FILE: MSMg01no322_j10.b1 PHD_FILE: MSMg01no322_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:35 2005CHROMAT_FILE: MSMg01no322_j10.g1 PHD_FILE: MSMg01no322_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATATTCAGAGAATCCGCGGAATTCCATGAGTCTACCCGAATTCT
TATCTCAAAAATGACAAGGGATTTGAGCCTAAGTGAGAGGTGGAAATACC
CCAGCTGGCAGGAGTCTTTAATAATTCGGTTGTATTACTACTGGTGAGTC
ACTTACAACTTGACAGGGGCTATATATGCATGGATACCTTTGTTCCTATT
AACATCTCTTTGAGGAATGCAAGACTCTGACTAGCTCTTATTTTGGTAGT
ACCTGCAGAGTTGTGTATCTTAGCATGTGCCTGCCTATAGAATCCTTTTT
TCTTGAACATGGGCTGGCCTGCGACTTTGCTTTAATCATTGTTTATGTGA
CCCCCCCCCCCCTCAAACCTTCTGATCACTTTTCCCAGTGGCCAACAAAT
GACATTTGACATATTAAATGTCTGAGTACCCTTAAAACTCTGTGCTCATA
ATAGAGCTATGAGGGGGAAACTAAAGCCCCAGATGAACGTTCAGTGCAAT
GTCCCACCAACTTACGAGCCTTGTGAATTAAGTCATCGTGCCAGGACATT
GTCTAATCCATACTGTCATTCTTGGTTGGTACCACACACAGTACAGATGA
CCTTTTCGCCTAATGCTGCCCAACTGTTAATAAAGTATAACTTACTATTA
AAAATTCCGCCTTAATTGCAAATAATATCTAATACTGTGCTTGAATTCTT
TCCTTGCCCCTAATATTAAGCACACTCGCGAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTACCGCAAAAAATTCTTAAATTAATTTGTTGACTTTT
TAAAATTATANTTTAGTGTGTGTGTGCCCCGTGTGTGTGTGTGTGTGTGT
GTGTGTGTACACCATGCTAAGTGTGCAAGTCATAATGAAATAACAGTTGC
TTCTTTCCTTCTACTACGATGTCCTGTATATTGCTCTCAGGTCTTCAAGG
ATTGGCATCTATCACTTTCTCTTTTTGAGCCATCTCGCTGACTTGAACAA
ATCACAATTTTATATTAACACCTTTTTTTTTTTTCAACCACATCATCTGC
CGAATACACCAAGATATCTTTTTTTTTTACGCCCCCCCCCCCCCCCATAA
CTAATTTGTATTTTAATTTTTTACCCCCTCCTAAAAACAAAAATAAATTA
CCTCCCCTTATTACGTTCTCTGCCCCTTATTACTTCTTAATATATTCACC
CATTCTCCCTTGATTATCCTATCTTGCATACTATTTCCCTCCTCCCTCTT
TTTTTCCCTTTACTTTTCCCCCCTAGTTCTCTTATCTCCTATACACCCCA
TTCCTCTTCCCTTTATTTTTTCCCCCCTTTCTTTTTCTTATCTTTTTTTT
ACACTCTCTCCCCTTTTATTCCACCCCCCTCTTTCCCACCTTCCTTTTTT
CCACCCTTTTCTTTTCTCCCATCTTTCCCTTAACTCCCTTTCCTTTTTCT
ACCTCCTCTCTCTCCCTTCCCTTCTCACTCTAATTTTTTTTTCACTCTTT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_j10.b1 MSMg01no322_j10.b1 CHROMAT_FILE:
MSMg01no322_j10.b1 PHD_FILE: MSMg01no322_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:35 2005
         (248 letters)



>mm_chr14_36220707_36221353
          Length = 647

 Score =  445 bits (230), Expect = e-129
 Identities = 244/250 (97%), Gaps = 5/250 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttatctcaaaaatgacaagggatttgagcctaagtgagaggtggaaat--accccagc 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||  | |  |||
Sbjct: 201 tcttatctcaaaaatgacaagggatttgagcctaagtgagaggtggaaatggatc--agc 258

                                                                       
Query: 59  tggcaggagtctttaataattcggttgtattactactggtgagtcacttacaacttgaca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 259 tggcaggagtctttaataattcggttgtattactactggtgagtcacttacaacttg-ca 317

                                                                       
Query: 119 ggggctatatatgcatggatacctttgttcctattaacatctctttgaggaatgcaagac 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggggctatatatgcatggatacctttgttcctattaacatctctttgaggaatgcaagac 377

                                                                       
Query: 179 tctgactagctcttattttggtagtacctgcagagttgtgtatcttagcatgtgcctgcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctgactagctcttattttggtagtacctgcagagttgtgtatcttagcatgtgcctgcc 437

                     
Query: 239 tatagaatcc 248
           ||||||||||
Sbjct: 438 tatagaatcc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 647
Length adjustment: 9
Effective length of query: 239
Effective length of database: 638
Effective search space:   152482
Effective search space used:   152482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)