BAC Information

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BAC

Clone NameMSMg01-322M14
Chromosome14 (Build37)
Map Location 19,796,818 - 19,797,132
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322M14.T7 (MSMg01no322_m14.b1)MSMg01-322M14.TJ (MSMg01no322_m14.g1)
ACCAG441387AG441388
length737751
length of high quality
(start - end)
318 (48 - 365)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no322_m14.b1 PHD_FILE: MSMg01no322_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:49 2005CHROMAT_FILE: MSMg01no322_m14.g1 PHD_FILE: MSMg01no322_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGG
AATTCCAACAGCTTCCCGACAGCACATGTAAGGATATGTTTTCCATCCCA
AAGTTGACCAACTCCAGCACTGATCCCTGGAGCTGTGCTGACTCCTCCTT
TGTTATTCTTGGTCTGCAGGGTGAGTTTCCAACTGCAGCAGCCAACCTTC
TACCTGACCCTTCCCTCACTAGGAATAAATGAAGGCTTCATGGCTCAATC
CAGTCCCTCTACTTGTCCAAGAACAAGCAGATATGGTCTGGGAGAGTAGG
ACAGAATCTGTCTTTCTAGTCCTGAATCATGAGCCCCACTTTGGTCTTTT
CTACTGGTGATCTGTTTTCTCATTCTCTCCCCTCAAGGGTCCTCCAGCTG
TCAGACTATAACTTCATGCCACGGCTGGAATTTATATCAACTTGACATAA
GCTAGAGTAATTTGGGAGTAGGGAGCCTCAGTTGAGAAAATGTCTCCAGA
AGACCAGGCTGTGGACAAGCTTGTTGGGCATTTTCTGAATTAGTTACTGA
TGGGGTGGTAGCCCTCTGTTTGTGGTACCACTCCAGGGATGGTGGTCATT
GGTTCTATAAGAAATCATAATGTGATTTAGTCAGTAAGAAGTACTGTTCC
ATGGACTATGTACCAGCTCCTGCCTCCAGGTTTCTGCCCTGTTTGAGCTC
TGTCTTGATTTCCTTTGATGATGAACAGCATTGTATA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGGCTTTTATCA
TGTTGGATTTTGTCAAATGTTTTCTCTGCATTTAACGAGATGATCATGTG
GGTTTTTTATTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTCC
ATATATTAAACCATCCCTGCATCCCTGAAATGAAGGCTACTTGGTCATTT
GTAGGCTTTGCAAGGATTTCATTGAATATTTTTGCATCTATATACATAAG
GGAAATTGGTCTGAAGTTGTCTATCTTTGTTGGGTCTTTATGTGGTTTAG
GTATCAGAGTATTATTTTTTGTTTACCCCCCCCCCCCCCTTGAAGATCAG
CCTTAATCCATGGTGATCTCACCCACCGCATGAAACAAATTCCATTTTTT
ATCTGTTATTGCCTGTTTTGTAACCAATTATATGGTCAATTATGGAGAAG
GTACCATGAGGTGGGTAGAAAAAGGTATATCCTTTTCTTTTACGATAAAA
TGTTCTTTAGATATCTTGTTTAATCCATTTTGTTTCTTAACTTCTGTTAT
TTCACTGTGTCTCTTGTTTACTCTCTGCTTCCATGATCCTGCCCTTTGAT
GATAGTGTTTCGTTTTTTTTCTCCTACTACTTTTGTTTGCCCCCGTTTTG
GGCACCGTCTGACCTCTCTCTTATTTTTTTCCTATTGACTGTTTTTTGCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_m14.b1 MSMg01no322_m14.b1 CHROMAT_FILE:
MSMg01no322_m14.b1 PHD_FILE: MSMg01no322_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:49 2005
         (318 letters)



>mm_chr14_19796616_19797333
          Length = 718

 Score =  586 bits (303), Expect = e-172
 Identities = 312/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccaacagcttcccgacagcacatgtaaggatatgttttccatcccaaagttgacc 62
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccaacagcttcctgacagcacatgtaaggatatgttttccatcccaaagttgacc 262

                                                                       
Query: 63  aactccagcactgatccctggagctgtgctgactcctcctttgttattcttggtctgcag 122
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aactccagcactgatacctggagctgtgctgactcctcctttgttattcttggtctgcag 322

                                                                       
Query: 123 ggtgagtttccaactgcagcagccaaccttctacctgacccttccctcactaggaataaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtgagtttccaactgcagcagccaaccttctacctgacccttccctcactaggaataaa 382

                                                                       
Query: 183 tgaaggcttcatggctcaatccagtccctctacttgtccaagaacaagcagatatggtct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaaggcttcatggctcaatccagtccctctacttgtccaagaacaagcagatatggtct 442

                                                                       
Query: 243 gggagagtaggacagaatctgtctttctagtcctgaatcatgagccccactttggtcttt 302
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 gggagagtaggacagaatctgtctttctagtcctgaatcatgagcccctctttggtcttt 502

                          
Query: 303 tctactggtgatctg 317
           |||||||||||||||
Sbjct: 503 tctactggtgatctg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)