BAC Information

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BAC

Clone NameMSMg01-322P02
Chromosome14 (Build37)
Map Location 101,714,291 - 101,881,735
singlet/doubletdoublet
Overlap geneLOC382936, Tbc1d4
Upstream geneLOC100043413, EG668683, EG668684, 1700110M21Rik, LOC100043421
Downstream geneCommd6, Uchl3, Lmo7, LOC100043795, LOC545567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322P02.T7 (MSMg01no322_p02.b1)MSMg01-322P02.TJ (MSMg01no322_p02.g1)
ACCAG441500AG441501
length740740
length of high quality
(start - end)
292 (73 - 364)288 (79 - 366)
definitionCHROMAT_FILE: MSMg01no322_p02.b1 PHD_FILE: MSMg01no322_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:01 2005CHROMAT_FILE: MSMg01no322_p02.g1 PHD_FILE: MSMg01no322_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,714,291 - 101,714,530)(101,881,449 - 101,881,735)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAAAGAGCGCGGA
ATTCTCCACTGTTTCTTCCAAGACACCCCCTTACACACTGGTGGAATGTA
TACCAGTTTAACCACTAAGAAAATTAGTTTGTAAGTTGCTCAGAAACCTA
AAAGTATATATACCATACGATCACATCTATAATTGCTGGGAGGATGCTAA
GTCACTATAGGGCACAGTACGTAAATATCAGTGCTACACTATTTATATTA
TCTAATCTGTGGACCCAACCTAGGTAAAGAAACAAATTATTACAAATACA
CACACACACACACACACACATATATATATAACTACATATACATATAAATG
AAAATAGAAAGAGAAAAAAGTAGAACGGAGAATATACAAAAAGAACATCA
TATACCTTGAAAAAGTCATTATGAAGCCCAGTACCATGTATAATGAATTT
GCAGCAATTCAAAAATTATTAGTCATAATTAAGAAGATGGACGGTCTTCA
ATGGTTCCTGTTTCCTGATGCCCTTCGGCATCTCTCCCAATTGCATACAC
ACTATACCTACTGAGTAGCCCAAACACAGTTCCTACAGCAAACACAACGG
GATGCCTTTTCATGATTCCAATCCCTAAACTCTGACTTCCTAGTAAGTTC
TCTCTACTGCCTTCTCCATTCACATATCTTGAGGAAGTAAGACTCTTGAT
CGGAACAAATAAGATTTTGAATATATGGCACAAATTGGCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGTTGTAATTTCACCTTCCCGT
AAAGCCAGACCACACGGGGGCAGCACTGAGTAAGGGCTCAAGGGCATACT
TTTTTATTTTTTATTTGGAGTAGATAATTTTTATTTTGCTGTTTAGAATT
AAAACAATTTGTTTTTACGTGTTCACTTTATACCCCTCTCACTGTCCCCC
TCCCCATCACCCCATCACAATCCTTTCCCCTTCCCCTTCCCCTTCCCTGC
CCCACCTGCTCACAGAGCATACTCTTAATTGTGCTTTCTGTGTTTACATT
GCTGCCTGTCCTTTGTTTTCTAGCACCCCGCCCCGACCACAATAACCTAT
TAGAATTTCCATGCAGTGCGAACGCTTACCACAAAATGGCTCTTGATCCA
TGGCTGTGACTTTTATTGTTGATTTAGTTGTTATTCTCTAAGGAGCCTAT
GGAGATCTCAAACATACACACACACTCTCACACCCACACACACACACTCA
CTCTCTTTCCCCCACACCCGCATGCACACTGATCATGAATCCGAATACTT
TACTTTGTAAAGCTAGATAGGCTGCCATAAGTATGACACAATTAACCAAG
GTTAATGCAGAGCTCTGATCTCTTTCTGCATTAGCTACCATGGAAAATCC
CGTAAAAGGCTCACATACCAAGCCTTCCGGAATACTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_p02.b1 MSMg01no322_p02.b1 CHROMAT_FILE:
MSMg01no322_p02.b1 PHD_FILE: MSMg01no322_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:01 2005
         (292 letters)



>mm_chr14_101714083_101714774
          Length = 692

 Score =  395 bits (204), Expect = e-114
 Identities = 231/240 (96%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttacacactggtggaatgtataccagtttaaccactaagaaaattagtttgtaagttgct 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttacacactggtggaatgtataccagtttaaccactaagaaaattagtttgtaagttgct 268

                                                                       
Query: 69  cagaaacctaaaagtatatataccatacgatcacatctataattgctgggaggatgctaa 128
           ||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct: 269 cagaaacctaaaagtatatatgccatacgaccacatctatagttgctgggaggatgctaa 328

                                                                       
Query: 129 gtcactatagggcacagtacgtaaatatcagtgctacactatttatattatctaatctgt 188
            ||||||||||||||||||| |||||||||||||| ||||||| |||||| |||| ||||
Sbjct: 329 ttcactatagggcacagtacataaatatcagtgctgcactattcatattagctaagctgt 388

                                                                       
Query: 189 ggacccaacctaggtaaagaaacaaattattacaaatacacacacacacacacacacaca 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggacccaacctaggtaaagaaacaaattattacaaatacacacacacacacacacacaca 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no322_p02.g1 MSMg01no322_p02.g1 CHROMAT_FILE:
MSMg01no322_p02.g1 PHD_FILE: MSMg01no322_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:01 2005
         (288 letters)



>mm_chr14_101881403_101882090
          Length = 688

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttgtaatttcaccttcccgtaaagccagaccacacgggggcagcactgagtaagggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgttgtaatttcaccttcccgtaaagccagaccacacgggggcagcactgagtaagggct 274

                                                                       
Query: 61  caagggcatacttttttattttttatttggagtagataatttttattttgctgtttagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 caagggcatacttttttattttttatttggagtagataatttttattttgctgtttagaa 214

                                                                       
Query: 121 ttaaaacaatttgtttttacgtgttcactttatacccctctcactgtccccctccccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ttaaaacaatttgtttttacgtgttcactttatacccctctcactgtccccctccccatc 154

                                                                       
Query: 181 accccatcacaatcctttccccttccccttccccttccctgccccacctgctcacagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 accccatcacaatcctttccccttccccttccccttccctgccccacctgctcacagagc 94

                                                          
Query: 241 atactcttaattgtgctttctgtgtttacattgctgcctgtcctttg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  atactcttaattgtgctttctgtgtttacattgctgcctgtcctttg 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)