BAC Information

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BAC

Clone NameMSMg01-323C14
Chromosome14 (Build37)
Map Location 87,508,337 - 87,508,766
singlet/doubletsinglet
Overlap geneDiap3
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311
Downstream geneEG665324, Tdrd3, LOC100043317
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323C14.T7 (MSMg01no323_c14.b1)MSMg01-323C14.TJ (MSMg01no323_c14.g1)
ACCAG441659AG441660
length1,1221,288
length of high quality
(start - end)		695 (126 - 820)639 (129 - 767)
definitionCHROMAT_FILE: MSMg01no323_c14.b1 PHD_FILE: MSMg01no323_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:24 2005CHROMAT_FILE: MSMg01no323_c14.g1 PHD_FILE: MSMg01no323_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATTTNNNNNNGTACATTGGCGCTAAGACTCCTATAGGGAGAGGATCCG
CGGAATTCACATAAGTAGAATCTCCCTGTAAGTTCCACTGTGTTTGCCTC
ATTATTTTAACATCTCTACAGAAGGCTTGCCTCTTCCTTCTTTGGGGTTA
TTTTATGAATAAAGTCACAGTGAGCATTTGCTTATTCTTTCTTTGTAGAC
ATTTGCTTAGAAGGGGATCATGTGCTAAGTATATGTTTAACCTTAGAAAT
GGGTAGTTTCCCCTGATGCCTGATGATGGTAACAGTCTGTGTGCTTAGTT
CTCATTGTTGTTTGCAATATCTATTACTAAATAAACAACTATTCAGGTAA
TCCACTTATCATTTAAGTGAGTCCTGCTAGTTTATCTTTCAAAGAATTTC
TTTTTAAAACTTTGTTTTCGAATTTGCAGACTTAATGTTGCTTATGGTAT
TTTCTTATCTTTTTAATGTAGGATATATTATCTTTTTCAAACCTGATAAT
GATAGCTTGTGATCTTTAATTTTTCCTTCTTTCTTGTTTAGTTTGGTTGA
AGTGTTTCAATGTTACTGAGTATTCCAAGAACCAGTATTTTACTAGTGAC
TATAGTTATTGTTCACTTCTATACATATATCAGGTTTTTAAAATTACTTT
GTCTTTTAAAATTTATTCTCTTGTTTCTTAAGGAGGAAACTTAAAATACT
TGTTGGTCATATAGAAACCTCATGCTTTAAGCTTCTGTTTGAGGAATGTG
ATAGTGTCTGTCAGCTGACCGATGTCTTCATGTGCTGGTTAGTTATATTT
TTTATTGGATATTTTATTTATTTGCATTTCCAATGTTATCTATCCCCCTT
TCTCCAGTTTCCTTTCTGCAAACCCCCATCTAATCCCCCTCCCTCTGCTT
CTATGAGGGTGGTCCCCCACCCAATCCCACCTAAAAACCCTGGCATTCCC
TTACATTTGGGAATTTGAACCCTTCTCCTGGACCCAAAATTCTTACTAAG
GGTGGAAAAAAAAAACTTGCCCTTTGAAAATTTCCCTTCCCCTAAAATTT
TTCTGGGGGGGAAAATCTCTTGAAAGGCCTTTTTTCTTTGAATTAAAGGG
TTCCCGTTTAGAAAGAGGCCCC

NCCAAACANNNNNNCTAGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAAATGACGAATACCGAA
TGGCAGAGAAGCACCTGAAACTTTGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTATAACCACTC
TGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGTTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCATAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACA
ATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACA
CTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGAGTTACA
GAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAAAGACTGCC
TTATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACCCCATTGC
ATACACTAACAAGAATTTATTGAAGGAACCCAGAAGTAAATGTCTCTTGT
GAAACTATGCCGGGGCCCTATCAAACACAAAAGTGGAGGCCCCACCGTCA
GCTAAGGGATGGATTACAGGNCTCCCCATGGGAGAACCTAAAAAAAATAA
CCCAAGAACTTAAAGGGATCTGCAACCCCTTTTGGGGGATTACACTTTTT
GAAATTAACCCGTAACCCGGGAACTCCTTGGACTCTATCTGTATAATGAT
ACAAAAAAATGGCCCCAATCGCGCCCTATCCGTGGAAAAAAAAGGCCCTA
TTTACACCATCAAAATTTTTATTTCCCCCCTCAAAGACGGAGATACCCCC
TTCCCCAAAAATTGTGGATAGTGTCGCTTCAAATTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_c14.b1 MSMg01no323_c14.b1 CHROMAT_FILE:
MSMg01no323_c14.b1 PHD_FILE: MSMg01no323_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:24 2005
         (695 letters)



>mm_chr14_87507672_87508766
          Length = 1095

 Score =  832 bits (430), Expect = 0.0
 Identities = 430/430 (100%)
 Strand = Plus / Minus

                                                                        
Query: 266  aaagaatttctttttaaaactttgttttcgaatttgcagacttaatgttgcttatggtat 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 aaagaatttctttttaaaactttgttttcgaatttgcagacttaatgttgcttatggtat 1036

                                                                        
Query: 326  tttcttatctttttaatgtaggatatattatctttttcaaacctgataatgatagcttgt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 tttcttatctttttaatgtaggatatattatctttttcaaacctgataatgatagcttgt 976

                                                                        
Query: 386  gatctttaatttttccttctttcttgtttagtttggttgaagtgtttcaatgttactgag 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  gatctttaatttttccttctttcttgtttagtttggttgaagtgtttcaatgttactgag 916

                                                                        
Query: 446  tattccaagaaccagtattttactagtgactatagttattgttcacttctatacatatat 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  tattccaagaaccagtattttactagtgactatagttattgttcacttctatacatatat 856

                                                                        
Query: 506  caggtttttaaaattactttgtcttttaaaatttattctcttgtttcttaaggaggaaac 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  caggtttttaaaattactttgtcttttaaaatttattctcttgtttcttaaggaggaaac 796

                                                                        
Query: 566  ttaaaatacttgttggtcatatagaaacctcatgctttaagcttctgtttgaggaatgtg 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  ttaaaatacttgttggtcatatagaaacctcatgctttaagcttctgtttgaggaatgtg 736

                                                                        
Query: 626  atagtgtctgtcagctgaccgatgtcttcatgtgctggttagttatattttttattggat 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  atagtgtctgtcagctgaccgatgtcttcatgtgctggttagttatattttttattggat 676

                      
Query: 686  attttattta 695
            ||||||||||
Sbjct: 675  attttattta 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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