BAC Information

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BAC

Clone NameMSMg01-323D03
Chromosome14 (Build37)
Map Location 19,171,958 - 19,172,378
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
Downstream geneLOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323D03.T7 (MSMg01no323_d03.b1)MSMg01-323D03.TJ (MSMg01no323_d03.g1)
ACCAG441685AG441686
length1,2461,290
length of high quality
(start - end)
296 (137 - 432)621 (132 - 752)
definitionCHROMAT_FILE: MSMg01no323_d03.b1 PHD_FILE: MSMg01no323_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:28 2005CHROMAT_FILE: MSMg01no323_d03.g1 PHD_FILE: MSMg01no323_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATTCTNNNNNNNATCAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTTTGTTTAGCTCTGTACCCCTTTAAGTACCAGGGNTAT
TTAATTTCTGGAATCCAACTCCTTGAACTCTTTGCATATATCAGATATTA
GTCCCCTATCAGATTTAAAATTGGTAAAAATCCTTTCCCAATCTGTTGGT
GGCTTTTTGGTCTTATTGACAATATCTTTTGCCTTACAGAAGCTTTGCAA
TTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACACCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTACCCTGTGCCCATATCTTCAAGGCTTTCCC
CCACTTACTCCTTTATACATTTCAATGTCTCTGGTTCTATGTGGAGGAGT
TTGATCCACTTCTTTTTGAGCTTTGTACAAGGAGAGAAGAATGGATCAAT
TTGCATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTGAA
AATGCTCTTTTTTCTATTGGACGGCTTTAGCTCCCTTGTCAAAGATCAAG
TGACCATAGGTATGTGGGTTCATTTCTGGGTCTTCAGTTCTATTCCATTG
ATCTACCTGTCTGTCACTGTACCAGTACCATGCAGTTTTTATCACAATTG
CTCTGTAGTAGAGCTTGAGGTTAGGCATGGTAATTCTACCAGAGGTTCTT
TTATTGTTGAGAATAGTTTTTTCTATCCTAGGTTTTTTGTTATAACAGAT
GCNNNCCGCTTTTTGTTTTACCCCCCCCAGAGAAGAAATGACTTGGAATT
TTGATGGGGATTGCATTTAATCTGTAAATTGCTTTCAGCAGCCTCACCAT
TTTAACTATATTAATCCTGCCCATCCATGAGCATGGAACATCTTTCCATC
TTCTGAGATCTTCCCTAACTTCTTTCTTCAAAAAACTGAAGTTCTTGTCA
TACAGATCTTTCATTTCCTTAATAAAAGCCCCCCAGCTATTTATATTTTT
GTGAACAATTGGCAAGTGGTTGTTTCCCCCAATTTTTTTTCCCTCCCGGT
TATCCTTTTCCTAAAAAAGGCCCACTATATTTTTTGATTTTTTTTTTACT
TACCCCTTTATTCTATTTTTTTTATTCCTTTAAAAATTTTCTGGTGCGAT
TTTTGGAACCCCTCAACTATTCAATTATATCTCGCTTCGATCAATTCAAA
ATTCAGCTCTCCCCTTTTTTTTGTCACCACATAAATAATTTTAATT
NCCGATATTNNNNNATAGATGGCAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGCCTCATGAGAAA
TGCGAAACCACAGAAATACAACTTTTAAATATGCCCCAATTCCTGTATTC
CTATGTTTTAAAATATCCTACAATATAATAATAGGTAAATATTTCTAATT
TTTCTAAAGTTTTCTTTTCAGTGCAAAAACCTTTTAATTCCATAGGTTGT
ACGTTTGATTTGAATCTTATTTCCGCGTGACCAAGCTCCTATTCTGAGTA
TTTATTCTGTGCCTGTGCCGGAGTGAGCTCCCCACGCCTCCCTCTGTATG
GTTCTGCTCTACTAGTGCGGCTTTTGACCCGCTTGGAATTCTTTTTAATT
CTGACAGAGAATTTTTTTCATTTTCATTCTTCCACCCCTAGATGTCAGTT
TTCCCAGCACTGTTTGTTGACAATGCTGTTTTGTTTTGCTTTTCCTCAGT
GGGTATTTTTGGCATCTTTGGGTTGTAAGGCTTATATCTGGGTCCCCAGT
CTTATTCAGTGTTTCAGCCTTTGTGCCAATACCATGCTGCTCTTCCTGCG
ATGACTCAGCAGGATAACTTGAAAGCTGGTTTGTTGATATCCTCCAGCAA
GGGTTTTATTATCCAGGGTTGTTTTTGAGATCTAGAGCCTTTCATGCCTC
CATATGAATTTTAGGTTTTTCTTTTCAATTTCTAGGAAGAATTGCTTCAG
AATTTGCTGGGAAAATCCCACTGAACCTATAGATTATTTTTTATATAATA
ACTATTTTCACAACATTAATACTACCAATGCATGTGCACAGGAGGTCTCT
CCATCTTCTGGTGTCTTCCTTGGTTTCTTCCTTCACGACTTTAAAGTTTT
CCTTCTTTCTTTCCTTCCTTCTTTCTTCCTTCCTTCCTTCCTTCCTTTCT
TTCTTTCTTCCATTCCTTCCTTCCCTTCCTTCCTTTCCTTCCTAATTAAT
AAATTAAATTAATTAATTTAATAGGCAAAAATCTCGTGGTATTTCTAATC
TGGGCCCTCAACTTTCTAAATTATGCCAAGGAGGAACCCTATAAACCTCG
GATCTTTCCTTGTCCCCCCGCGGAGGGTATTATAAGACAAAGGATATCTG
CCACGTCCTCTTTTTATTATACCTCTCGGGAAACCACTTATATAAACAGG
GGCGAGAAATACAAAGATTATTCTTCTGAATAATCTAATCTCCTAATACC
TCAATATATCTAACATCTATTCATTATTAATACCACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_d03.g1 MSMg01no323_d03.g1 CHROMAT_FILE:
MSMg01no323_d03.g1 PHD_FILE: MSMg01no323_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:28 2005
         (621 letters)



>mm_chr14_19171958_19172980
          Length = 1023

 Score =  609 bits (315), Expect = e-178
 Identities = 378/427 (88%), Gaps = 47/427 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccccaattcctgtattcctatgttttaaaatatcctacaatataataataggtaaata 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 421 tgccccaattcctgtattcctatgttttaaaatatcctacaataaaataataggtaaata 362

                                                                       
Query: 61  tttctaatttttctaaagttttcttttcagtgcaaaaaccttttaattccataggttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttctaatttttctaaagttttcttttcagtgcaaaaaccttttaattccataggttgta 302

                                                                       
Query: 121 cgtttgatttgaatcttatttccgcgtgaccaagctcctattctgagtatttattctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgtttgatttgaatcttatttccgcgtgaccaagctcctattctgagtatttattctgtg 242

                                                                       
Query: 181 cctg-----------------------------------tgccggagtgagctccccacg 205
           ||||                                   |||||||||||||||||||||
Sbjct: 241 cctgtatgccagagtgagctccccacgcctccctctgtatgccggagtgagctccccacg 182

                                                                       
Query: 206 cctccctctgtatggttct-gctctactagtgcggcttttgacccgcttggaattctttt 264
           ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||
Sbjct: 181 cctccctctgtatggttctag-tctactagtgaggcttttgacccgcttggaattctttt 123

                                                                       
Query: 265 taattctgacagaga-----atttttttcattttcattcttccacccctagatgtcagtt 319
           |||||||||||||||     |     ||||||||||||||||||||||||||||||||||
Sbjct: 122 taattctgacagagaaaagga-----ttcattttcattcttccacccctagatgtcagtt 68

                                                                       
Query: 320 ttcccagcactgtttgttgacaatgctgttttgttttgcttttcctcagtgggtattttt 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ttcccagcactgtttgttgacaatgctgttttgttttgcttttcctcagtgggtattttt 8

                  
Query: 380 ggcatct 386
           |||||||
Sbjct: 7   ggcatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1023
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1013
Effective search space:   618943
Effective search space used:   618943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)