BAC Information

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BAC

Clone NameMSMg01-323G11
Chromosome14 (Build37)
Map Location 99,382,999 - 99,383,655
singlet/doubletsinglet
Overlap genenone
Upstream geneDach1, LOC635593, LOC619716
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323G11.T7 (MSMg01no323_g11.b1)MSMg01-323G11.TJ (MSMg01no323_g11.g1)
ACCAG441834AG441835
length1,2241,184
length of high quality
(start - end)
694 (132 - 825)749 (88 - 836)
definitionCHROMAT_FILE: MSMg01no323_g11.b1 PHD_FILE: MSMg01no323_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:54 2005CHROMAT_FILE: MSMg01no323_g11.g1 PHD_FILE: MSMg01no323_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCAACTTCTTGNNNNNCCATTGGGCGCTATAXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCACTAATAAAGATGCCATTTAAACATATCTAGTAG
ATACCAATACAATATAAACACCTGTGGTGTTTACTACAAATGAACTATCT
GAAAAAGAAAGCGAGAAAATAATTGTTCTAGCTTCAGTTCTGTTGCTATG
ACTGCCATATCTTGACAAAAAAAGGGGTGGGTGACAGTTTGTTTCAGCTC
ACAGTTACAAGTTACTGTCCTCCTCAGGTAAGTTAAAACAGTGTTTCATA
TCACACCCCTAGTCCAGAGCAGAGAGAATGAATCCATGCATGCCCTGTTG
TTTTCTTGCTTGTGCTCAATTCAATTTCTTTGCTACTGAATCATTCAGGA
GCCTGTTTAGGGAATGACTCTTCCAACAGGGACTGGGTCCCCCCACATGA
ATGAACTTGATTAAGAGAACCCATTCATGCAATGAGGCTCTTCCTACATC
ACACAAGGTCATGGCAACTTGACAATTAAGGTTAACCTTCGGAATAAAAT
AGGTAGCAACAAAATATTTTGGAACATATTAATCGTGAAAGTAAAAGATA
TATATTCTAAAATCTGTAAAATATTGATAAAAAAATTGAAATGACACAAA
TAAATAAATACACTCCATGTTTATGATTTGGAAGAATTAGTATTACAAAA
ATGTTCATAATATCCCCTAAATGATCTCTAACTTCAATATAATCTCTGTT
AAAACTCCAAGGTCACTGTGATAGTAACTAGAAAAGAAGGAAATGTGAAA
AGTCATGTGACACAGTAAATGACCTCTCAATAATTCTCTTCATAAATAAT
TCTCTCATTCTTAAGCAAAAAGAACAAAGCCAGAGGTATTATATTACATG
ACATCCAAGTCTCCTCCAAGCCTGTTATCATCACACTGTGACAGAAACAC
ATATGTCCATGGCCCAAAAAAAAAACCCCCCCTAAATCCAAAATTTTAGA
ACAAGCAAATTCCTTGGAAAAAAAAACAAAAACTTGATCCTAAAAAAAGA
AGGGCTTTTATTAAATGGGGTGGGAACTAAAATCCTCTTTTCTAAAAGAA
ATTTAAGCCCCTCTCTCCCCAAACATAATCCAATCCCCCTGAATGGATAC
AAAAAATTTAACTGGGGTATATTAAAAACAAACCCAAAAAAGCCTCGTCC
CCTTAATAAAAGTTTGGGATAAAA
NCCCCTCATTTTNNNCCGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATGTAGATCAGGCTGGC
CTTGACCCCATAGAACTTCACTTACCTCTGCCTCCCGAAAGCTGAGGTTA
AAGTCATGCACCACTACGCCTGGCTAACCTCACAAAGACTTTGTTCTACT
CGATTTAGGATGTTGTAAAACATCTGACTTTCCCATTTAGGTCTATTGAC
TATTTAAGATTAGATGTTTCATTTTGAGATAAAAAGGTTATTCCTCTAGA
AATGCTCACTAAAGCAAGATGAGTCTGGAACTTGTTGGGTTTTTTTTTTT
ATTTGTTTGTTTGTTTTTTCTTTACTTTTAATTTCTACTGTGATGTTGTT
TAACAATTCTAAAAGTAGCTCTTTGGCCACCAACTTTCCACCACTCTGCT
TAGTGGTTTCTCTCTGTACAGGTCATGGCCGAACCCCCACAGTGGTCACA
GAGCACTTTCCCAGGATGTGTGCCACGAAGGGAGGAATCCTTACTGTTCA
AGAAGTCCTGGATTGTAAGTGCTCCCCTTAAGTTAATGTTCCTACCGTGA
CCTCAGTGGGTTCCTAGCATTGAAAAAGAGTTGACCTGAATGAGAGCACA
TGTAGAATTTGAATGACAAATAGGGGGAAAAGGCACTTAAGACAATTAGG
TTGAGTTTTCTTTAGATTCCTTGTGTTTCCTTCTACAACGCAGCAACTGT
AAATCTCACCAAGGAAATGTTAAGTTCTTAATTCATCGACTTCTCATAAA
AAAATGAACAGCAAAACTGGCCCAGACCCCTTGGTCTAGCAAATTTTATA
TGTCGCAGTACAGGGGAAAGCCAGGGCCAAGAAGTGGGAGTGAGTGGGTA
GGGGAACAGGCCGTTTGGGAAGATTTAAGAGATTTTGGGAAAAAATTTTG
TAAAGTATAAGTAAAAATATTTTNTATAAAATTAAATCTTCTTAAAATAC
TTGGGCTTATAACAAAAATTGGGTTTATTTCACGATGGTTTTCCTGGCGA
ATCAAAATCTTANAACATTCTTCTTGGTTTCTATACTCTCTCTCTTTTTT
CTCTTCCTTATTGTAAAAATCCAATCTTTTGATTCCTCTTTTACTCATAA
TCAATAAATATTATTGTTACACACATTAACAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_g11.g1 MSMg01no323_g11.g1 CHROMAT_FILE:
MSMg01no323_g11.g1 PHD_FILE: MSMg01no323_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:54 2005
         (749 letters)



>mm_chr14_99382507_99383655
          Length = 1149

 Score = 1232 bits (637), Expect = 0.0
 Identities = 653/659 (99%), Gaps = 2/659 (0%)
 Strand = Plus / Minus

                                                                        
Query: 91   cctcacaaagactttgttctactcgatttaggatgttgtaaaacatctgactttcccatt 150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 cctcacaaagactttgttctactcgatttaggatgttgtaaaacatctgactttcccatt 1090

                                                                        
Query: 151  taggtctattgactatttaagattagatgtttcattttgagataaaaaggttattcctct 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 taggtctattgactatttaagattagatgtttcattttgagataaaaaggttattcctct 1030

                                                                        
Query: 211  agaaatgctcactaaagcaagatgagtctggaacttgttgggtttttttttttatttgtt 270
            ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 1029 agaaatgctcactaaagcaagatgagtctggaacttgttggg--tttttttttatttgtt 972

                                                                        
Query: 271  tgtttgttttttctttacttttaatttctactgtgatgttgtttaacaattctaaaagta 330
            |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 971  tgtttgttttttctttacttttaatttctactgtgatgttggcaaacaattctaaaagta 912

                                                                        
Query: 331  gctctttggccaccaactttccaccactctgcttagtggtttctctctgtacaggtcatg 390
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  gctctttggccaccaaccttccaccactctgcttagtggtttctctctgtacaggtcatg 852

                                                                        
Query: 391  gccgaacccccacagtggtcacagagcactttcccaggatgtgtgccacgaagggaggaa 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  gccgaacccccacagtggtcacagagcactttcccaggatgtgtgccacgaagggaggaa 792

                                                                        
Query: 451  tccttactgttcaagaagtcctggattgtaagtgctccccttaagttaatgttcctaccg 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  tccttactgttcaagaagtcctggattgtaagtgctccccttaagttaatgttcctaccg 732

                                                                        
Query: 511  tgacctcagtgggttcctagcattgaaaaagagttgacctgaatgagagcacatgtagaa 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  tgacctcagtgggttcctagcattgaaaaagagttgacctgaatgagagcacatgtagaa 672

                                                                        
Query: 571  tttgaatgacaaatagggggaaaaggcacttaagacaattaggttgagttttctttagat 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671  tttgaatgacaaatagggggaaaaggcacttaagacaattaggttgagttttctttagat 612

                                                                        
Query: 631  tccttgtgtttccttctacaacgcagcaactgtaaatctcaccaaggaaatgttaagttc 690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611  tccttgtgtttccttctacaacgcagcaactgtaaatctcaccaaggaaatgttaagttc 552

                                                                       
Query: 691  ttaattcatcgacttctcataaaaaaatgaacagcaaaactggcccagaccccttggtc 749
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551  ttaattcatcgacttctcataaaaaaatgaacagcaaaactggcccagaccccttggtc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1149
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1139
Effective search space:   841721
Effective search space used:   841721
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)