BAC Information

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BAC

Clone NameMSMg01-324B20
Chromosome14 (Build37)
Map Location 17,880,754 - 17,880,920
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
Downstream geneThrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324B20.T7 (MSMg01no324_b20.b1)MSMg01-324B20.TJ (MSMg01no324_b20.g1)
ACCAG442352AG442353
length738744
length of high quality
(start - end)
693 (46 - 738)663 (82 - 744)
definitionCHROMAT_FILE: MSMg01no324_b20.b1 PHD_FILE: MSMg01no324_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:20 2005CHROMAT_FILE: MSMg01no324_b20.g1 PHD_FILE: MSMg01no324_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCCTTATTTACTACCCGAAATCTATGGAAAGAATTGTGAGCATGTTAC
ATGCTTATTTGGCTGGATAAAGGCTATGTTCAGGGCAATTGATATTTTGC
AGAAATTTACAAATCAAATAGCCTTATAGGAATTTGTGCCTTGCTACCAC
TCATGAAAAAAAAAAATTCTGTACATGTACTAGGAAACATTAGGACCATA
ATGCTGCCAGCATTTGCCTCTAGGAATTATTTGTGAAACTTCTTTTCTGT
GCCAGGCTTCAAAAGAGGACATCTTTTATTAAACATGAACTCCCTATTTT
ATATTTTAACCATTTTAGCCTTCAGAAGACTCGAGGTTGGAAGGGGCTAG
GAACTGCTTACTGTGACATGACATGGCCATCAAACAGGCTGCTGTTTATG
CTTTCCCTTCCTATATACCAGTGCTCACAAGACTATGAAACTAGTGATGA
TCATTGGGTAGATAGACTGGTGGCTTGTTTGCTGTAGGTGGGATTGAGAT
TTGGTAGAGAATTGTTCTGGCACAGTCTCCTGCACGCTCCTTCCCTTCAG
TGCTCTAGAGTTCCTGTCTTCTCTTCCAGATTTCCCTCCATGAAGTTTGC
TGAATCAGATTGTCTGGGAACTCTGATGGCATGAATAATATATGTTAGGG
ATCCTCCCATGTGCATATAACATAGGTGGTACTCAAAA
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGTGTCCATGAACATG
GACATTCTGACCTGGAGTGAGCACACTGCTGTTTCCCTACACATGTGCAT
GCTGAAATTGAGAGAGCACACTGCTGTGTCCTTACACATGTGCATGCTGA
TCTGGAGTGAGCACACTGCTGTGTCCCTTCACATGTGCATGTAGAACTGG
ACTGAGAAAACTGCTGTGTCCTTACACATGTGCATGCTGACCTGAAATGA
GCACACTGCTGTGTCCTTACATATCTGCATGCTGACCTGGAGTGAGCCCA
CTGCTGTGTCCTTACACATGTGCACGCTAACCTGGAGTGAGCACAGTACT
GTGTCCTTACACATAGGCATGCTGACCTGGAGTGAGCATACTGTTCTGAC
CTTACACATCTGCATGCTGACCTGTAGTAAGCACACTGCTGTGTCCTTGC
ACATGTGCATGCTGGCCTGGAGTGAGTAAACTGCTGTGTCCTTACACATG
TGCATCCTGACCTGGAGTGAGCACACTGCTATATCCTTACATATGTAGAC
GTTGATCTGAAATAAGCACACTGCTATATCCTTACACATGTTCATGCTGA
CCTCGAGTGTGCACACTGCTGTGTCATTACACATCTGCATTTTGACATGG
AGTGATCACACTTCTGTTTACTTACAAATGTGCATGCTGAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_b20.b1 MSMg01no324_b20.b1 CHROMAT_FILE:
MSMg01no324_b20.b1 PHD_FILE: MSMg01no324_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:20 2005
         (693 letters)



>mm_chr14_17880551_17881643
          Length = 1093

 Score =  284 bits (147), Expect = 1e-80
 Identities = 162/171 (94%), Gaps = 8/171 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccttatttact----acccgaaatctatggaaagaattgtgagcatgttacatgc 59
           ||||||||||||||||        ||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaattccttatttactggtg----gaaatctatggaaagaattgtgagcatgttacatgc 315

                                                                       
Query: 60  ttatttggctggataaaggctatgttcagggcaattgatattttgcagaaatttacaaat 119
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttatttgactggataaaggctatgttcagggcaattgatattttgcagaaatttacaaat 255

                                                              
Query: 120 caaatagccttataggaatttgtgccttgctaccactcatgaaaaaaaaaa 170
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caaatagccttataggaatttgtgccttgctaccactcatgaaaaaaaaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)