Query= MSMg01no325_c07.b1 MSMg01no325_c07.b1 CHROMAT_FILE:
MSMg01no325_c07.b1 PHD_FILE: MSMg01no325_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:37 2005
(268 letters)
>mm_chr14_85268243_85268910
Length = 668
Score = 468 bits (242), Expect = e-136
Identities = 260/266 (97%)
Strand = Plus / Plus
Query: 1 caggcacatatccaacctttgctctactctctttataatcatatacaatgatgtgagatt 60
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 201 caggcacatatccaacctttgctcttctctctttataatcatataaaatgatgtgagatt 260
Query: 61 gtctgctattgcatgctttatccttcgagttctggagaaagaaaatgagaaaagaacgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgctattgcatgctttatccttcgagttctggagaaagaaaatgagaaaagaacgca 320
Query: 121 gaattaaataaaccgataagatagatctatccaattcagatttaaaattgaatttcaact 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattaaataaaccgataagatagacctatccaattcagatttaaaattgaatttcaact 380
Query: 181 tgtttaaaggtatctgcactgtttacacaaacaaataccaaaatgcatctgctacttagc 240
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgtttaaaggtatctgaactgtttacacaaacaaatacaaaaatgcatctgctacttagc 440
Query: 241 attgagcaggatttcccatatcgctg 266
|||||| |||||||||||||||||||
Sbjct: 441 attgagtaggatttcccatatcgctg 466
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no325_c07.g1 MSMg01no325_c07.g1 CHROMAT_FILE:
MSMg01no325_c07.g1 PHD_FILE: MSMg01no325_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:37 2005
(634 letters)
>mm_chr14_85435934_85436968
Length = 1035
Score = 1164 bits (602), Expect = 0.0
Identities = 628/638 (98%), Gaps = 4/638 (0%)
Strand = Plus / Minus
Query: 1 tctaagaattaatatttattcaagaagtcctgtagacagggatatgtgtaagtacctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 tctaagaattaatatttattcaagaagtcctgtagacagggatatgtgtaagtacctgtt 970
Query: 61 gccctgcaaaaggccccagtttggttctagatccctctctagtagctcacaactacctaa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 969 gccctgcaaaaggccccagtttggttctagatccctgtctagtagctcacaactacctaa 910
Query: 121 aatttcagctctggataatttgataccaccttttggcttcagcatgcatttacacttaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 aatttcagctctggataatttgataccaccttttggcttcagcatgcatttacacttaca 850
Query: 181 cgaaca---cgaacctcccccccccc-aactccaggaacacattaaaattaaaattaaga 236
| |||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 849 caaacacttcttacctcccccccccctaactccaggaacacattaaaattaaaattaaga 790
Query: 237 taaggaataaaatctaagaaaacggtagaaggaaacagaataaaataataaagcctaaaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 taaggaataaaatctaagaaaacggtagaaggaaacagaataaaataataaagcctaaaa 730
Query: 297 tcacaggccagtgctttctcaattactacctctactagtcacttctaaagctgcattggc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tcacaggccagtgctttctcaattactacctctactagtcacttctaaagctgcattggc 670
Query: 357 tccttgtaaatgcttttgtgctggaacaggggtcacacatgtatttcctttctgcaatgg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tccttgtaaatgcttttgtgctggaacaggggtcacacatgtatttcctttctgcaatgg 610
Query: 417 ggaggatatttcttttaagctcagggaattcctgaagaaggccatcactgaggattttct 476
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggtggatatttcttttaagctcagggaattcctgaagaaggccatcactgaggattttct 550
Query: 477 tatgatggagctagagttttaaaggcctgttggggttggatagaatattcatctctgcct 536
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 549 tatgatggagctagagttttaaaggtctgttggggttggatagaatattcatctctgcct 490
Query: 537 gagacacaactgaatattaagagtacagcctcgaataagtttgtgaattctgatatcggg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gagacacaactgaatattaagagtacagcctcgaataagtttgtgaattctgatatcggg 430
Query: 597 agtcacgaggaaatctgtcaacactttcttgctggtaa 634
||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agtcacgaggaaatctgtcaacactttcttgctggtaa 392
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space: 639600
Effective search space used: 639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
