BAC Information

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BAC

Clone NameMSMg01-325F01
Chromosome14 (Build37)
Map Location 20,604,752 - 20,605,178
singlet/doubletsinglet
Overlap geneNid2
Upstream geneUbe2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855
Downstream gene2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325F01.T7 (MSMg01no325_f01.b1)MSMg01-325F01.TJ (MSMg01no325_f01.g1)
ACCAG443235AG443236
length735734
length of high quality
(start - end)
690 (46 - 735)505 (76 - 580)
definitionCHROMAT_FILE: MSMg01no325_f01.b1 PHD_FILE: MSMg01no325_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:48 2005CHROMAT_FILE: MSMg01no325_f01.g1 PHD_FILE: MSMg01no325_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCATTCCCACTAAAT
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGT
CAAGGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGT
GACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTCAAATCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCANAATTCCAACTCAATTCTTCA
ACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGACTCACTTAGAAAGAGAAGAA
TGGTTTCCTTAAAGGAGCCATCACTGGACTTCACAGAATGGCCCTCTGAT
CCCTGCCTGCCGAGGGAGGACGAGCACCGTGTTCTGTCCTGTGACGATAT
GGCAAAGTGCTTGGGACAGAGGACTACAGTTGGAGGACAGCAAGAGTCAC
AGGCTTCTCTTCCTCATTGGGGTATTGCACTATCTGCATCTTGCAAAGCC
AGTGTTGGAGTTGGTCTTGTGCGCTGTGTATTCAGATGCTGAGTTCTGTG
CTCCAGAGTCGGGCTGCAGTTTGGACATGGGCACTGTATTGACCAATGTG
CTGTCAAGAATGCTCCCCAGTAATCTCTGATTGGATAAGAAAAAGCTAGA
GCCCGTGACTGGGCAGAAGAGAGAGGAAGGCAGAACTTGGGTCTGAGTGA
GGAGATCTCGAGTAGGGACCATGAGGAGAAGAACAAAGGAGAAGGGAAAG
AGGAGGTCACCATGAGACATGATGGACCATGAGCACATGGCCAAGAGAAG
CTTGCCCTGAGGACACACAGACGACAGCGAGATCAGCTGGCATTTATCTG
CTTACTGATAGACTAGTCAGGTTAGAATAGCTCAGAACCTGCCCAACACT
GCCATCAGGTGGTTAACAAGATCTGAAGTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_f01.g1 MSMg01no325_f01.g1 CHROMAT_FILE:
MSMg01no325_f01.g1 PHD_FILE: MSMg01no325_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:48 2005
         (505 letters)



>mm_chr14_20604752_20605656
          Length = 905

 Score =  795 bits (411), Expect = 0.0
 Identities = 423/427 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgactcacttagaaagagaagaatggtttccttaaaggagccatcactggacttcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actgactcacttagaaagagaagaatggtttccttaaaggagccatcactggacttcaca 368

                                                                       
Query: 61  gaatggccctctgatccctgcctgccgagggaggacgagcaccgtgttctgtcctgtgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaatggccctctgatccctgcctgccgagggaggacgagcaccgtgttctgtcctgtgac 308

                                                                       
Query: 121 gatatggcaaagtgcttgggacagaggactacagttggaggacagcaagagtcacaggct 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatatggcaaagtgcttgggacagaggactacagttggaggacagcaagagtcacaggct 248

                                                                       
Query: 181 tctcttcctcattggggtattgcactatctgcatcttgcaaagccagtgttggagttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctcttcctcattggggtattgcactatctgcatcttgcaaagccagtgttggagttggt 188

                                                                       
Query: 241 cttgtgcgctgtgtattcagatgctgagttctgtgctccagagtcgggctgcagtttgga 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct: 187 cttgtgcgctgtgtattcagatgctgagttctgtgctccagagttgggctgcaatctgga 128

                                                                       
Query: 301 catgggcactgtattgaccaatgtgctgtcaagaatgctccccagtaatctctgattgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 catgggcactgtattgaccaatgtgctgtcaagaatgctccccagtaatctctgattgga 68

                                                                       
Query: 361 taagaaaaagctagagcccgtgactgggcagaagagagaggaaggcagaacttgggtctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  taagaaaaagctagagcccgtgactgggcagaagagagaggaaggcagaacttgggtctg 8

                  
Query: 421 agtgagg 427
           |||||||
Sbjct: 7   agtgagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)