BAC Information

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BAC

Clone NameMSMg01-325G15
Chromosome14 (Build37)
Map Location 21,189,519 - 21,189,888
singlet/doubletsinglet
Overlap geneAA536717
Upstream geneLOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd
Downstream geneDnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325G15.T7 (MSMg01no325_g15.b1)MSMg01-325G15.TJ (MSMg01no325_g15.g1)
ACCAG443309AG443310
length735734
length of high quality
(start - end)
374 (47 - 420)611 (71 - 681)
definitionCHROMAT_FILE: MSMg01no325_g15.b1 PHD_FILE: MSMg01no325_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:55 2005CHROMAT_FILE: MSMg01no325_g15.g1 PHD_FILE: MSMg01no325_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAATAGTTGACAGAGTATGCATAAATAAAGTCACATTAGAAAAA
TCTGGGGGGAGATGCTACTGATATTGGCATAGTTTATCACATGACCTACC
AATTCTATGTGTGTGTGTATACACAAAAACCATCAACTACCCAAATAACT
GAGGGAAGGTTTTTTTTTCTTTTCCTTTTCTCTCTCTCTCTCTCTCTCTT
TTATTTTTGAGATAGTATCTTTGTATCCTTGAATTCGCAGAGATTCTCCT
GTCTCTGTCTCCCAAGTACTGATAAGTAAAGGTGTGTCCCTCTATACCTG
GTTTAGGGAAATGGTTTCTTTTTGCTTGTTCATTTTGGAGGGAGGAGGGA
CAGGGTTTCTCTGTATAGCCCTGACTGTCCCTGGAATTCATTTCTGTAAA
ACCGGTTGGTTTCGATCTTCTGCCTCCCAGTGGTGGGATTAAAGGGGTAT
GTCACCACTCCTAGCTTTGGGAAGTGTTGGGTTCTATGTAGTTAAGTGTG
TTGAAACTCCCGATTCCCCTCCTTTGCCTCTTATGTTGGGATCATATGCA
TATACCATCACGCCTGGCTTATTCTTACTTCAATTTCACACAAAAATACT
CTGTGCTGTTGGCAATCCAAGAGGGCCTTCTTGAAGCGCCCGACATATTT
CTATTTCCGTATTCTGTAAGCATGTTCATTACAAN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTCAGTTACAGACTTTTGTTGTGCAGATC
TTGTTCCTTGTTTAAAAAAAAAAAAAAACTATTAAAAAAATAATTGGCTA
CAGACAATGACTGGAAGGATTAGAGGTAAGTGGGTTTTGAGTTACAAGGT
TGGGGGTAGAGAAGAGAAAGCAAAAGCAGAGACCAGGAGGAGAAGGAAGA
ACAAAAAAAAAAAAGAGGAAGCCATCATGAGAGGAGATGGACCATGAGCC
TGTGGCCAGGAGAAACAGCAAGTATCTGGGGTACACTGCTGGGGAGGCAG
CCAGGTCAGGAGTTAGAAAAGTACCTTAGGGGTTACCCCCCAGTAATTGT
CAAAGCCAAATAAAACACACCACAGCCTGGGTCTTACTTATCTGTCACCT
AGTTGAGGATAAGTTTAAATTGGTTGTACTACATGTTAGTCCTCATCTTC
CAACTTGTTGGCTTTTATTGATTTATGTACTCATTTAGGTATTTATTCAT
ATATTTATTTATCTATTTATTTTTGTTTAAAATATTTTTAATTGAAAATA
GTTTATTCTATACAATATTGTTTAATTATGGTTTTCTCTCCCTCAACTCC
TCCCAGTTCTTCCCCACCTCCCCCCATCCAGATTGACCTCTTTTCTGTCT
CTCCTTAAAAACTGGGAGGTAGGCATGTTGACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_g15.b1 MSMg01no325_g15.b1 CHROMAT_FILE:
MSMg01no325_g15.b1 PHD_FILE: MSMg01no325_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:55 2005
         (374 letters)



>mm_chr14_21189507_21190280
          Length = 774

 Score =  677 bits (350), Expect = 0.0
 Identities = 366/372 (98%), Gaps = 2/372 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcacaatagttgacagagtatgcataaataaagtcacattagaaaaatctggggg 62
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggaattcacaatagctgagagagtatgcataaataaagtcacattagaaaaatctggggg 323

                                                                       
Query: 63  gagatgctactgatattggcatagtttatcacatgacctaccaattctatgtgtgtgtgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gagatgctactgatattggcatagtttatcacatgacctaccaattctatgtgtgtgtgt 263

                                                                       
Query: 123 atacacaaaaaccatcaactacccaaataactgagggaaggtttttttttcttttccttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atacacaaaaaccatcaactacccaaataactgagggaaggtttttttttcttttccttt 203

                                                                       
Query: 183 tctctctctctctctctctcttttatttttgagatagtatctttgtatccttgaattcgc 242
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctctctctctctctctct--tttatttttgagatagtatctttgtatccttgaattcgc 145

                                                                       
Query: 243 agagattctcctgtctctgtctcccaagtactgataagtaaaggtgtgtccctctatacc 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 144 agagattctcctgtctctgtctcccaagtactgagaagtaaaggtgtgtccctctatacc 85

                                                                       
Query: 303 tggtttagggaaatggtttctttttgcttgttcattttggagggaggagggacagggttt 362
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 84  tggtttagggaaatggtttctttttgtttgttcattttggagggaggagggacagggttt 25

                       
Query: 363 ctctgtatagcc 374
           ||||||||||||
Sbjct: 24  ctctgtatagcc 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)