BAC Information

Click to search

BAC

Clone NameMSMg01-326E02
Chromosome14 (Build37)
Map Location 30,035,614 - 30,209,694
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326E02.T7 (MSMg01no326_e02.b1)MSMg01-326E02.TJ (MSMg01no326_e02.g1)
ACCAG443927AG443928
length727716
length of high quality
(start - end)
577 (74 - 650)636 (81 - 716)
definitionCHROMAT_FILE: MSMg01no326_e02.b1 PHD_FILE: MSMg01no326_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:56 2005CHROMAT_FILE: MSMg01no326_e02.g1 PHD_FILE: MSMg01no326_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,035,614 - 30,036,190)(30,209,060 - 30,209,694)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAAAGAGGATCCGCGGA
ATTCATTACTTACCTTTAAGCGGGTAGGGTTTTTGTCAGAACTCCCACTA
ATGAATTGTTCAGCCTTCATGGAAGTACAATAATGACAATAATTCTCAGG
AAGTTGTTGGTTCTTGCTGTCTTTCATTTGTTAGCCCCAAATACACCTTC
TCTGCATTACTTAGATTAAGGACTTTGTGAAGGAGGCCTTTGAAAGAGAA
AGAACTTGGGCAACAGTGCAGCAGGGCGTGAAATCCCAATCTGGATGGTT
GGCTGTGTTGTATAAAATTCTTTCAGGAATGGAGAAGCTCAGCACAGAGG
TAGGGAACAGAGCAGTGGAGTTCACAGTAGCTGATGGAAAGTTTCCCAAC
CATATCATGACAGTTGGCCTATGCAGGGCTCCGAATGAAATCCATTATGT
TGCCCACAGAGCATGGGATTCTGGCAGACTTGGAGAAAAAAATAATGTTT
CTCTCTGTGAGCTTTAAAAGTTATCAAACGGCCTCCCACTGATCCTCTCA
CGGAGACTAAGGGCCTGCAGCTTGGGAGTGTTAGTTCCCATAGTGGACCC
AACAATCAGTTATAAGAGCATTTTGAGAGGGAACTGAACACATACTAAAA
GATAAAGTAAGATACAAAGGCTACTGGAGTCTGTTTGGCAACCTGCAAAA
AAGTCCAAGCACAAAATTCTGAGAATN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTAGCCCCCAATGACCA
TTTTAATAATTTGCCTGTGAACATCAGTCTGAGTGATGTGCAAGTGCCAA
CGAACATGTACAACAAAGGTAAGACTCCCTGTCCTGCTCCGATTAGAGGG
TGAAGAGGATCGAGGCGCACCCCCTTAGTGCAGCAACACCTCAAGTACTC
AGGTATCTTCCAGGTGGGCCTTCCATGTGCCTGTTCTGCCTGGAGACTCT
CAGCTGCTGTTTCTCTCCTTCATGTTAATGTGCAGTGCAGAAATCAGCAG
GCTTTTTCTGTAAGTATCTTTGCTCTGCCTGCCTTGCAGTCTCTGTTACA
ACTGGTTAGCTATTTCTGTAAGCTGGGAGCATGGCTTTATTCCTTTAACA
CGTTTATCTGCAAAGTCACCTTGCTAGATTAAACATGCTTACGGACCCAG
TTTGTCCCTCCCTTATTCTGCTTTCCTTTCTTGAAGATATTTAAGGGTTG
GGAGTTTCTGGGATTGCTGTGAGACCAACTGCAGGCTGTCCTCTTTCCTT
ATGGCAAAGAGAAGTATGGGCATAACAAAGTTCTATGTGTCCTGGCTTAA
CTCCTTGAAATCTATTCTTCACCTGGACATTGAAGTTATTTGCCCAACCT
TCCCATCAGCCCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_e02.b1 MSMg01no326_e02.b1 CHROMAT_FILE:
MSMg01no326_e02.b1 PHD_FILE: MSMg01no326_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:56 2005
         (577 letters)



>mm_chr14_30035414_30036390
          Length = 977

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagggtttttgtcagaactcccactaatgaattgttcagccttcatggaagtacaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagggtttttgtcagaactcccactaatgaattgttcagccttcatggaagtacaataa 260

                                                                       
Query: 61  tgacaataattctcaggaagttgttggttcttgctgtctttcatttgttagccccaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacaataattctcaggaagttgttggttcttgctgtctttcatttgttagccccaaata 320

                                                                       
Query: 121 caccttctctgcattacttagattaaggactttgtgaaggaggcctttgaaagagaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccttctctgcattacttagattaaggactttgtgaaggaggcctttgaaagagaaaga 380

                                                                       
Query: 181 acttgggcaacagtgcagcagggcgtgaaatcccaatctggatggttggctgtgttgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgggcaacagtgcagcagggcgtgaaatcccaatctggatggttggctgtgttgtat 440

                                                                       
Query: 241 aaaattctttcaggaatggagaagctcagcacagaggtagggaacagagcagtggagttc 300
           ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaattcatccaggaatggagaagcccagcacagaggtagggaacagagcagtggagttc 500

                                                                       
Query: 301 acagtagctgatggaaagtttcccaaccatatcatgacagttggcctatgcagggctccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagtagctgatggaaagtttcccaaccatatcatgacagttggcctatgcagggctccg 560

                                                                       
Query: 361 aatgaaatccattatgttgcccacagagcatgggattctggcagacttggagaaaaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgaaatccattatgttgcccacagagcatgggattctggcagacttggagaaaaaaat 620

                                                                       
Query: 421 aatgtttctctctgtgagctttaaaagttatcaaacggcctcccactgatcctctcacgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgtttctctctgtgagctttaaaagttatcaaacggcctcccactgatcctctcacgg 680

                                                                       
Query: 481 agactaagggcctgcagcttgggagtgttagttcccatagtggacccaacaatcagttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agactaagggcctgcagcttgggagtgttagttcccatagtggacccaacaatcagttat 740

                                                
Query: 541 aagagcattttgagagggaactgaacacatactaaaa 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagagcattttgagagggaactgaacacatactaaaa 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no326_e02.g1 MSMg01no326_e02.g1 CHROMAT_FILE:
MSMg01no326_e02.g1 PHD_FILE: MSMg01no326_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:56 2005
         (636 letters)



>mm_chr14_30208860_30209895
          Length = 1036

 Score = 1205 bits (623), Expect = 0.0
 Identities = 632/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttagcccccaatgaccattttaataatttgcctgtgaacatcagtctgagtgatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 atcttagcccccaatgaccattttaataatttgcctgtgaacatcagtctgagtgatgtg 776

                                                                       
Query: 61  caagtgccaacgaacatgtacaacaaaggtaagactccctgtcctgctccgattagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 caagtgccaacgaacatgtacaacaaaggtaagactccctgtcctgctccgattagaggg 716

                                                                       
Query: 121 tgaagaggatcgaggcgcacccccttagtgcagcaacacctcaagtactcaggtatcttc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgaagaggatcgaggtgcacccccttagtgcagcaacacctcaagtactcaggtatcttc 656

                                                                       
Query: 181 caggtgggccttccatgtgcctgttctgcctggagactctcagctgctgtttctctcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 caggtgggccttccatgtgcctgttctgcctggagactctcagctgctgtttctctcctt 596

                                                                       
Query: 241 catgttaatgtgcagtgcagaaatcagcaggctttttctgtaagtatctttgctctgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 catgttaatgtgcagtgcagaaatcagcaggctttttctgtaagtatctttgctctgcct 536

                                                                       
Query: 301 gccttgcagtctctgttacaactggttagctatttctgtaagctgggagcatggctttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gccttgcagtctctgttacaactggttagctatttctgtaagctgggagcatggctttat 476

                                                                       
Query: 361 tcctttaacacgtttatctgcaaagtcaccttgctagattaaacatgcttacggacccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tcctttaacacgtttatctgcaaagtcaccttgctagattaaacatgcttacggacccag 416

                                                                       
Query: 421 tttgtccctcccttattctgctttcctttcttgaagatatttaagggttgggagtttctg 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 415 tttgtccctcccttattctgctttcctttcttgaaggtatttaagggttgggagtttctg 356

                                                                       
Query: 481 ggattgctgtgagaccaactgcaggctgtcctctttccttatggcaaagagaagtatggg 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 355 ggattgctgtgagaccaactgcaggctgtcctctttcgttatggcaaagagaagtatggg 296

                                                                       
Query: 541 cataacaaagttctatgtgtcctggcttaactccttgaaatctattcttcacctggacat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cataacaaagttctatgtgtcctggcttaactccttgaaatctattcttcacctggacat 236

                                              
Query: 601 tgaagttatttgcccaaccttcccatcagcccatt 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tgaagttatttgcccaaccttcccatcagcccatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)