BAC Information

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BAC

Clone NameMSMg01-327P24
Chromosome14 (Build37)
Map Location 22,275,906 - 22,276,363
singlet/doubletsinglet
Overlap genenone
Upstream geneAnxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327P24.T7 (MSMg01no327_p24.b1)MSMg01-327P24.TJ (MSMg01no327_p24.g1)
ACCAG445210AG445211
length746759
length of high quality
(start - end)		462 (49 - 510)59 (334 - 392)
definitionCHROMAT_FILE: MSMg01no327_p24.b1 PHD_FILE: MSMg01no327_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:00 2005CHROMAT_FILE: MSMg01no327_p24.g1 PHD_FILE: MSMg01no327_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAACCG
CGGAATTCCTGGCCTGTTGCGACTCCCTGTAGCTGATAGACTATATATGC
TGACTGTCAGGGCCAACCACACCATGACCTTGGAGTCTGAACAGAATGTC
ATTTCAGAATGTCATAATGGCCCTGATGAGACAGGAGAGCCTGTGTTTGG
AGATGGTGCCTCATGCTCTCTCACAAAGTGCTTCCTCTAAGGCTTCTAGA
AATGGAGACAGGGGATGGAAGGCTCCAAAGAGACCTGAAGTCCCTTTTGT
GCTCACGCATTCTCTGCCTCTTTGCCAAGTCATCCTGTCCAGGCTTGTTC
ACCCCGGAGTCGCAGATTCATCCTTTACCTCCTCGGCAGCTGGTCTTTTA
GGGACAACTCTGGGTAACTTCCTCCCACTGTTGCAGTCTCTTTCCTCTCA
GTCTCTTGCCTGAGGAATTAAGCACTCTGCTTCCTGGAAGGCTACACAGN
ACACCTGCAGNCCTCAACATGGGGGCCACTGAGACTTCAACTAGTGTAGC
CTACAACTGTAGCAGATTGGNCTTAAATTTGTCGGCTGGTCTGTCTTGTG
AGNCCTATGAAGTAGCCCAGGCCTGGACTTGAACTCCCTGGTGAATCCCA
GATAAGCCTTCCAATTCAGGCTAACGCCTCTCCTCCTCCTTCCTCATTGT
CTCGAATGAGAAGGCTTGAACCTGACTTGCCACCTTGTCTGTTTCN

TTTCGATGAAGTGGGAGGNNTGNCGTTCCCTGGTCTTCCACAAAAGGTGA
CNNANNCCAAGGATTCCCCCAATTCAGTGNNNNNNNAAACCNNNNNNNTA
TCCAAAGNCTTNNNNANGANCGNNAAGGATNCATCTGGGNTCCCNAGTGT
TNCNATAATCTGTATGTACAATAAACGGCTCATCTACGTGGTAACAATTA
CTATGGACCTCATCCAGTTAATTAATGAGATTATTTAACCCAGGCTTTAT
CTGGGGGGGGGGGTANTCACCTTTTAAATACCGGACATGAANTGGCTGCT
TCAGAGAGCCCATGAACAGAGAACGAGCTTGATCTAAAATTCTGTCGGAC
TTGACAAGATCNAAAGACTATTAACAAGGCCTCTCTGGCACCAAGAGACT
CTGGGGGAGGCCGTGGTACACAGAACACACAAACCCTCCCATCTCTGAAC
TTCACACTTTATAAAAAAACAACAAAACATTTGTCTACCCCCTGGCCCCC
TTAAGTTACGTTCGCANTTGTTTTTAACAATGNGTAAATCTACTTACTTC
TGCGTCTCCTCCGTTGATAATTACTGCCATCAGGTCAGACATTTTCACAC
CATATGAATGCAGTTCACTGTGCCCTACAGAGCTACANTTATCTTGAAGA
GGCCAANATTNNTATAAAAACTAAAAATTTTNTTTGCACATTCCAAGCCC
TTTCTCCACATGTTGGCNCTGCTTAGTTTCTTTCTNCTGTAAGCCCTTTA
TATGAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_p24.b1 MSMg01no327_p24.b1 CHROMAT_FILE:
MSMg01no327_p24.b1 PHD_FILE: MSMg01no327_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:00 2005
         (462 letters)



>mm_chr14_22275702_22276563
          Length = 862

 Score =  857 bits (443), Expect = 0.0
 Identities = 454/458 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggcctgttgcgactccctgtagctgatagactatatatgctgactgtcaggg 64
           |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcctggcctgctgtgactccctgtagctgatagactgtatatgctgactgtcaggg 264

                                                                       
Query: 65  ccaaccacaccatgaccttggagtctgaacagaatgtcatttcagaatgtcataatggcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaaccacaccatgaccttggagtctgaacagaatgtcatttcagaatgtcataatggcc 324

                                                                       
Query: 125 ctgatgagacaggagagcctgtgtttggagatggtgcctcatgctctctcacaaagtgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgatgagacaggagagcctgtgtttggagatggtgcctcatgctctctcacaaagtgct 384

                                                                       
Query: 185 tcctctaaggcttctagaaatggagacaggggatggaaggctccaaagagacctgaagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctctaaggcttctagaaatggagacaggggatggaaggctccaaagagacctgaagtc 444

                                                                       
Query: 245 ccttttgtgctcacgcattctctgcctctttgccaagtcatcctgtccaggcttgttcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccttttgtgctcacgcattctctgcctctttgccaagtcatcctgtccaggcttgttcac 504

                                                                       
Query: 305 cccggagtcgcagattcatcctttacctcctcggcagctggtcttttagggacaactctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccggagtcgcagattcatcctttacctcctcggcagctggtcttttagggacaactctg 564

                                                                       
Query: 365 ggtaacttcctcccactgttgcagtctctttcctctcagtctcttgcctgaggaattaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtaacttcctcccactgttgcagtctctttcctctcagtctcttgcctgaggaattaag 624

                                                 
Query: 425 cactctgcttcctggaaggctacacagnacacctgcag 462
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 625 cactctgcttcctggaaggctacacagtacacctgcag 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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