BAC Information

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BAC

Clone NameMSMg01-328B09
Chromosome14 (Build37)
Map Location 10,866,972 - 10,867,404
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100041948, LOC100042415
Downstream geneLOC100041974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328B09.T7 (MSMg01no328_b09.b1)MSMg01-328B09.TJ (MSMg01no328_b09.g1)
ACCAG445275AG445276
length724717
length of high quality
(start - end)
348 (70 - 417)433 (79 - 511)
definitionCHROMAT_FILE: MSMg01no328_b09.b1 PHD_FILE: MSMg01no328_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:07 2005CHROMAT_FILE: MSMg01no328_b09.g1 PHD_FILE: MSMg01no328_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGACAGTACCCAGAGGGAATTTATAGAACCCACCTCTAGTAGGG
AGACAGGACATAAAGTGATGGGGTTGCCATCTCACAGTCACATCTCTGAC
CCATAATTGTTCTTGTTTGAAAGAATTACAGGGATGGAAATGGAGAGGAG
CCTGAGGAAAAGAAGTTCCAGTGACAGGCCCAAAGTGGGATCCAGCTCAA
GGGGAGGTCCCAAGGCCTGACACTATTACTGAGGCTATGGAGAGCTCACA
AAAAGGGATCTATAATGACTGTCCTCAGAAAGACCTAACAAGCAGCTGAA
AGAGTCAGATGCAGATATTTGCACCCAAGCAATGGAAGGATGCAACTGAC
CCCTATTGTTGAATTGGGCACCCCTGGAAGCTGAGGAGAAGGGTGATCCT
GTAGGAGGAAGCAGTCTTAATTAATCTGGACCCCCGAGATCTTTCTAACA
CTGGACCACCAAACAGGCAGCATACACCAGCTGGCATGAGGCCCCCAATA
CTCATACCAGTACAGGACTTCCGTTTCTCTGTTCATTCAGAGATGATGCA
CCTACACCCCCAGAGACTGCAGGCCCCACTGAAGTCTATAGCCCATGTAG
CGTTTTTTCATGTTTTTCTTCCCTTTGTCCCCCTCCATTTATTCCTACCA
CTTATTCATTCATTCTTTATTTCC
CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACTTTCATTGCTAGGATCT
CAGCTGTGCCCAGTACTCTGGACTCTCTTTGGTGGTGATGTGCTCCTCTG
TAACCCCTGCACAGGGGGGACTGAACAGGCCAAGTCAAGAGTTCTGAGCA
AGCCTAAATCACGCATCAAGAAGAGGCCTTGTCTCAAAACAAAGCAAACA
AATGACCCAAGTACCAACAACTTCTTTGCCTACAACAACTTGCCTTTTGT
ATGACTGCCCCTGCATTTGTGTTCCATTTTTTAAAATCATCTGGGTTTCT
TATGCCCTCTCTGATTCACAGCTCTTGCCCTGAATAACTTATACAAAGTG
TTTCTGTGAGAAAGTAATGGGAACGACCTACCTGGGTGGCAACCTTTTTG
AAAAAGGAAGAAAACACTGTATCAGTACAATGAGAAGTTTCTAGAACCTC
CATCTCCAGAGAGATGAGTGCTGGATGGCTTGGTTTTATCGCACATAGAC
TGAAAACTCAATGATAGTTCTTCTTGGGAAAGAGTTTCTGAAAGTACTCG
TTTTGCCTTGGTGAGGTAGGTCTGTGGAATCCAGTGTTTCCGATAAATGT
GTCCCTTGGCTATTACAGGACGGAATATGTCTGTTTCTCAACCCTGCCAA
GATCGCTCCACGTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_b09.g1 MSMg01no328_b09.g1 CHROMAT_FILE:
MSMg01no328_b09.g1 PHD_FILE: MSMg01no328_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:08 2005
         (433 letters)



>mm_chr14_10866602_10867434
          Length = 833

 Score =  731 bits (378), Expect = 0.0
 Identities = 419/438 (95%), Gaps = 10/438 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttactttcattgctaggatctcagctgtgcccagtactctggactctctttggtggtga 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tttacttccattgctaggatctcagctgtgcccagtactctggactctctttggtggtga 744

                                                                       
Query: 61  tgtgctcctctgtaacccctgcacaggggggactgaacaggccaagtcaagagttctgag 120
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 743 tgtgctcctctgtaatccctgcacaggggggactgaaaaggccaagtcaagagttctgag 684

                                                                       
Query: 121 caagcctaaatcacgcatcaagaagaggccttgtctcaaaacaaagcaaacaaatgaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 683 caagcctaaatcacgcatcaagaagaggccttgtctcaaaacaaagcaaacaaatgagcc 624

                                                                       
Query: 181 aagtaccaacaacttctttgcctacaacaacttgccttttgtatgactgcccctgcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagtaccaacaacttctttgcctacaacaacttgccttttgtatgactgcccctgcattt 564

                                                                       
Query: 241 gtgttcca-----ttttttaaaatcatctgggtttcttatgccctctctgattcacagct 295
           ||| ||||     |     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtgctccagcaact-----aaaatcatctgggtttcttatgccctctctgattcacagct 509

                                                                       
Query: 296 cttgccctgaataacttatacaaagtgtttctgtgagaaagtaatgggaacgacctacct 355
           ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 508 cttgccctgaataacttatgcaaagtgtttctgtgagaaagtaatgggaatgacctacct 449

                                                                       
Query: 356 gggtggcaacctttttgaaaaaggaagaaaacactgtatcagtacaatgagaagtttcta 415
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 448 gggtggcaacctttttgaaaaaggaagaaaacacagtatcagtagaatgagaagtttcta 389

                             
Query: 416 gaacctccatctccagag 433
           ||||||||||||||||||
Sbjct: 388 gaacctccatctccagag 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)