BAC Information

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BAC

Clone NameMSMg01-328K14
Chromosome14 (Build37)
Map Location 63,976,280 - 64,148,811
singlet/doubletdoublet
Overlap geneBlk, LOC668293, BC065085, Tdh, Mtmr9
Upstream geneRnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868
Downstream geneXkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328K14.T7 (MSMg01no328_k14.b1)MSMg01-328K14.TJ (MSMg01no328_k14.g1)
ACCAG445703AG445704
length735743
length of high quality
(start - end)
370 (40 - 409)344 (69 - 412)
definitionCHROMAT_FILE: MSMg01no328_k14.b1 PHD_FILE: MSMg01no328_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:52 2005CHROMAT_FILE: MSMg01no328_k14.g1 PHD_FILE: MSMg01no328_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,148,446 - 64,148,811)(63,976,280 - 63,976,622)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAAGATCCGCGGAATTCT
CATCTGTCCCCTATCTCATTTAGACTCCGTATCCTACTGATGGTACAGGA
AATGTCCATTATTATGGAGTTTCCCATCTGTACTTTGGGTTTTCCTCTCA
GGGAAGGTGCATCAGTGTTGATTCATGGGACAGAAGGAACTGATTCCACA
CTGCAGGTGACTTCTCTGGCCCAGATCATCCTGGAACCAAGAAGCAGGAC
CATCCGAGGCTTTGAGGCCCTGATAGAGAGGGAGTGGCTGCAGGTGAGAG
CGCTGCTGGGAAGGCACGGGAGGGATGCCAGGCATTGGAATTGAAGTCTC
ACTTGTGGTGCTAATACTATGCATGACAGCTTGATCATTGAAAAATTTTA
AGTTGTGTGCGCCCCCCCCTGTGAGTCAGATAATCTACCTTCACCCAAAT
AAGAATTTAGACTTTTCATTAGCTTCCAGTTTCTCAATCTCCCATGCTGT
TTGTTGAACTGGGCCTGCATACACTTAAGCAGTCGACCCACCACGGAGCC
GCAGCCCTGCCCCAGCATCTCTGTTTAGATGGCTCACACTTGTGCAGGTT
GAGCATCCCCAGTGTGAAAATCCCCAGTGCTCCACAATGCCGACTCCTGA
AGTCTGTGATTACAGCATTCGGATATTCTGTGTGCAGTCTGTTTGTTCAT
ACACACCCTCTGCCTGGTTTATATAGCGGTTTCTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGGCATCTGAAGGGCCTTCCTAGTTCTCCTA
ACTCTTTCTGCAGCTAAGGAAGACCCTGCCAACCAGCCAGGCTGAGCAAA
CTCTGGGTACAGCAGGGATAGATGGTGGCTAAAACCTAGATCCCACTTCT
AGACAATGATCAGGGACAGAAAGGGACTCCAGACAGGGACAGTTCTTACA
TTTACCCATTGTGTGTATGTGACCTTGTGTCCCTGGGAATAAAGACAGGA
CAGGCTCTCCTTCCCAAACTACAGGTGAGAGTATCACAGCCCCAGGAAGG
ATGCTTAATGCTGTCAAGGACCATGACCTGGCAGCTGACACATGCCAATC
TGCGCTCTATGCCACCAGCTGGTCCCACAGAACTGGTAGCCACAAAGAGG
ACTTCCAGATTATGTAGGGGCTGTGATAACCAATGTTGGCTCTGTATGCG
ACTTTTAGGGACAATGTGGTCTATGCAAGTCCCCACTCAGAAGCTGTTGA
ATGAACGACAGGATATTTACCACATAAGGGCATAGGATGGGGCCCCTTAT
TAGGTTTGATCCAGAGAGTGTGCTATGATTACAGGTTAGGTCTGATCTCA
GTGCTCAACTGAACTTGTTTTATTATTCTGAAAATACAGGAAATAGCTAA
CGTATCAATAATGTACCTTGTAGACAAGGTTCCTTTAACTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_k14.b1 MSMg01no328_k14.b1 CHROMAT_FILE:
MSMg01no328_k14.b1 PHD_FILE: MSMg01no328_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:52 2005
         (370 letters)



>mm_chr14_64148242_64149011
          Length = 770

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatctgtcccctatctcatttagactccgtatcctactgatggtacaggaaat 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gaattctcatctgtccagtatctcatttagactccgtatcctactgatggtacaggaaat 511

                                                                       
Query: 65  gtccattattatggagtttcccatctgtactttgggttttcctctcagggaaggtgcatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtccattattatggagtttcccatctgtactttgggttttcctctcagggaaggtgcatc 451

                                                                       
Query: 125 agtgttgattcatgggacagaaggaactgattccacactgcaggtgacttctctggccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agtgttgattcatgggacagaaggaactgattccacactgcaggtgacttctctggccca 391

                                                                       
Query: 185 gatcatcctggaaccaagaagcaggaccatccgaggctttgaggccctgatagagaggga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gatcatcctggaaccaagaagcaggaccatccgaggctttgaggccctgatagagaggga 331

                                                                       
Query: 245 gtggctgcaggtgagagcgctgctgggaaggcacgggagggatgccaggcattggaattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtggctgcaggtgagagcgctgctgggaaggcacgggagggatgccaggcattggaattg 271

                                                                       
Query: 305 aagtctcacttgtggtgctaatactatgcatgacagcttgatcattgaaaaattttaagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aagtctcacttgtggtgctaatactatgcatgacagcttgatcattgaaaaattttaagt 211

                 
Query: 365 tgtgtg 370
           ||||||
Sbjct: 210 tgtgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no328_k14.g1 MSMg01no328_k14.g1 CHROMAT_FILE:
MSMg01no328_k14.g1 PHD_FILE: MSMg01no328_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:52 2005
         (344 letters)



>mm_chr14_63976080_63976823
          Length = 744

 Score =  632 bits (327), Expect = 0.0
 Identities = 339/343 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcatctgaagggccttcctagttctcctaactctttctgcagctaaggaagaccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcatctgaagggccttcctagttctcctaactctttctgcagctaaggaagaccctg 260

                                                                       
Query: 61  ccaaccagccaggctgagcaaactctgggtacagcagggatagatggtggctaaaaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ccaaccagccaggctgagcaaactctgggtacagcagggatagatggtggctaaaactta 320

                                                                       
Query: 121 gatcccacttctagacaatgatcagggacagaaagggactccagacagggacagttctta 180
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gatccctcttctagacaatgatcagggacagaaagtgactccagacagggacagttctta 380

                                                                       
Query: 181 catttacccattgtgtgtatgtgaccttgtgtccctgggaataaagacaggacaggctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttacccattgtgtgtatgtgaccttgtgtccctgggaataaagacaggacaggctct 440

                                                                       
Query: 241 ccttcccaaactacaggtgagagtatcacagccccaggaaggatgcttaatgctgtcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ccttcccaaactacaggtgagagtatcacagccccaggaaggatgtttaatgctgtcaag 500

                                                      
Query: 301 gaccatgacctggcagctgacacatgccaatctgcgctctatg 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccatgacctggcagctgacacatgccaatctgcgctctatg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)