BAC Information

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BAC

Clone NameMSMg01-328O02
Chromosome14 (Build37)
Map Location 113,737,545 - 113,738,153
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509, Tpm3-rs7
Downstream geneLOC100043510, LOC382947, LOC668791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328O02.T7 (MSMg01no328_o02.b1)MSMg01-328O02.TJ (MSMg01no328_o02.g1)
ACCAG445861AG445862
length733731
length of high quality
(start - end)
603 (42 - 644)453 (71 - 523)
definitionCHROMAT_FILE: MSMg01no328_o02.b1 PHD_FILE: MSMg01no328_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:09 2005CHROMAT_FILE: MSMg01no328_o02.g1 PHD_FILE: MSMg01no328_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAACAAATATCGCCCACGTATCCAAATACCCAGGCTCATTTAGAGTGTC
TACCATTATGTATAGTGTTTTGCTTTATGCACATACCTACAAAATAAAAT
TTAGTACTATGAAAGATTAATATTTGTATTAGTCATTGTATAGAATGGGT
CTCTGTCTTCATGGAGCAGGAGAATTTATAAAATAGCTTACAGGCTGAGA
TCTAGTTAATTCAACAATGGCTGGCTATGACTGGAAAGACCAAGAACCCC
GTAGTTGCTCAGCAGAAGAAAAGGGATGTCTCAGTTGGTCTACAATATAT
AATGGAATCCTGGAGAAGTAAGAGCTAGTACCAGTGAAGGAATCGATTTA
TTAGGAAGGTAAAGGTACAATCAAAGAACATAGACACAAACATACAATAT
ACACACCCATAAGCAACATCTATATATCTGTTATCATACACACACAATTG
TGTTACTTAATTAATTTAGATACATACAGATAGAAAGATAGATAGATAGA
TAGATAGATAGATAGATAGAGACAGAGATAGAGACACAGACATAGACATA
GAGATATATGTAATTTAAGTTTGCCATGTATATTACACTGTACAATTTAN
AGTAATTTAGGTTGATTTTATATAGATAGGTAGATCAATACATACATGCA
TACTTAGCTATAGGTGATATGGTAGTATATATT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGACATACTCCAGAGAACCAACAACCCTA
TTTTAAGAATGGGAAACAGAGCCAAACAAAGAATTCTCAAGTGAGGAATA
TAAAGTGGCTGAGTGTAGCTGCCAAAGCCCACAGGTTACTGGGTTCCTGA
AATGAAAGCTGGGGATAGATGGGAAAAACAGGNGGGCGGAAAAAAAAAAA
AAAAAAAAAAAAAAAACAAGCCAAGACAAAGTTCTCTGATCAAGGCTCAA
CGTTTACTTTTCGAGTTTAAACTTTAAAAGTGGGAAAACCCTTTCCCCAC
TATGCCAGGATCTCATGGCTTGTCAGGATCTGGTCAGGACAAAGAGCCTA
GGCTGCTCATCAGGTAGCACCATCTTTCAGGAAGCTGCAAATGTGGCAAA
CAATAGACTTTACCTAGGTTGGAAGACTCCACCCTAGGTGGGCTACCCAG
CTGTGGCAAAAACAAGGTCTGCTCAAGGCTGGCAGAGAGCAAAGTTCCTC
CCTTTTTATTTATCAAAAATTGCTGGTCTAGGGCATAAAATTTACTTATG
CTCCATGGTCCTGCCTGGAAATTATGGTGCCTGGCTGTACCGCCTGGCTT
GGGACTGAGTCTGTACTCCCTCTTACCCATCTTAGAGGTCACACACAGCT
TGCTTGTGTTTATTTGCACAACATGCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_o02.b1 MSMg01no328_o02.b1 CHROMAT_FILE:
MSMg01no328_o02.b1 PHD_FILE: MSMg01no328_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:09 2005
         (603 letters)



>mm_chr14_113737343_113738347
          Length = 1005

 Score = 1004 bits (519), Expect = 0.0
 Identities = 584/611 (95%), Gaps = 16/611 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaacaaa-tatcgcccacgt--atccaaatacccaggctcatttagagtgtcta 61
           ||||||||||||| |||| ||| |||  ||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaaacaaaatatc-ccc-cgtgaatccaaatacccaggctcatttagagtgtcta 260

                                                                       
Query: 62  ccattatgtatagtgttttgctttatgcacatacctacaaaataaaatttagtactatga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattatgtatagtgttttgctttatgcacatacctacaaaataaaatttagtactatga 320

                                                                       
Query: 122 aagattaatatttgtattagtcattgtatagaatgggtctctgtcttcatggagcaggag 181
           | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 acgattaatatttgtattagtcattgtatagaatgggtctctgtcttcatgaagcaggag 380

                                                                       
Query: 182 aatttat-aaaatagcttacaggctgagatctagttaattcaacaatggctggctatgac 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttattaaaatagcttacaggctgagatctagttaattcaacaatggctggctatgac 440

                                                                       
Query: 241 tggaaagaccaagaaccccgtagttgctcagcagaagaaaagggatgtctcagttggtct 300
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||
Sbjct: 441 tggaaagaccaagaaccccatagttgctcagcagaagaaaagggatatctcagttggcct 500

                                                                       
Query: 301 acaatatataatggaatcctggagaagtaagagctagtaccagtgaaggaatcgatttat 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 501 acaatatacaatggaatcctggagaagtaagagctagtaccagtgaaggaatcaacttat 560

                                                                       
Query: 361 taggaaggtaaaggtacaatcaaagaacatagacacaaacatacaatatacacacccata 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 taggaaggtaaaggtacaatcaaagaacataaacacaaacatacaatatacacacccata 620

                                                                       
Query: 421 agcaacatctatatatctgttatcatacacac--acaattgtgttacttaattaatttag 478
           |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||
Sbjct: 621 agcaacatctatatatctgtcatcatacacacgcacaattgtgttacttaattaatttag 680

                                                                       
Query: 479 atacatacagataga-a-------agatagatagatagatagatagatagatagatagag 530
           ||||||||||||||| |       ||||||||||||||||||||||||||||||||||||
Sbjct: 681 atacatacagatagatagatagatagatagatagatagatagatagatagatagatagag 740

                                                                       
Query: 531 acagagatagagacacagacatagacatagagatatatgtaatttaagtttgccatgtat 590
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 acagagatagagacacagacatagacatagagatatatgtaatttaagtttgtcatgtat 800

                      
Query: 591 attacactgta 601
           |||||||||||
Sbjct: 801 attacactgta 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1005
Length adjustment: 10
Effective length of query: 593
Effective length of database: 995
Effective search space:   590035
Effective search space used:   590035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)