BAC Information

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BAC

Clone NameMSMg01-328O13
Chromosome14 (Build37)
Map Location 100,934,769 - 100,935,136
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668672, EG546623, Klf12, LOC100043413, EG668683
Downstream geneEG668684, 1700110M21Rik, LOC100043421, LOC382936, Tbc1d4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328O13.T7 (MSMg01no328_o13.b1)MSMg01-328O13.TJ (MSMg01no328_o13.g1)
ACCAG445880AG445881
length726733
length of high quality
(start - end)
374 (48 - 421)345 (83 - 427)
definitionCHROMAT_FILE: MSMg01no328_o13.b1 PHD_FILE: MSMg01no328_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:11 2005CHROMAT_FILE: MSMg01no328_o13.g1 PHD_FILE: MSMg01no328_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAATCC
GCGGAATTCCTCTGATTGACAGTTTGATCTGGTTTCAATTTTGGGTTAGT
GAGGTTGATGTGAAGGGTGTGTTAGACTATATCACATTAGACAGTGAAAG
AGGATAATGTGCAAGGAGGCAAAGGTGAGCAAGAAGACAGCACTCTGCTG
TATCTGCACATGTAGACATATCCCCACATATATTTATGACATGTAAACAC
AGTTTTTATACAGATGTTCATTATAATATTGCTTACATTAGAAAATAGTC
ACAATTTCTTGTTGAAGAGTAATTTAAGTGATTGGTAGTATGTCAATAAG
ATTTGAAGATATGCAAGCAATAAAACATTTCATCATATAATAAATGTCCC
TGATATACCAATATGATGGCCCCCCCCCTGTCAACATTATGAGGCTGAAG
AGTGCTCAGCTACCTAGTCAAACATTCTGGCTGCATCTGTGAGGGTGTTT
CTACATAGGACTAGCATTTGAATTGGCAGAGTGAATAAAACAGATTCTCT
TTTCCAGCATGAGTGGGTTTCGTCAATCTCTGGAAGGTCTGACTGGAACA
AACATTGAGAATGATGAAGAATTTGGTGTCTCTAGCTTACTTCTCTGTTT
CTCATGCCTTTAGGATCTACTCAAGTCTCCAGGTTTCTGATTGCCAATGA
TGGTGTCTTCCGCTTCGCGTATTCGT
AAAANCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCTA
ATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGAGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACATCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCACATGCTGGTGAGGATGTGAAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTTAGATTATTGGATATAGTACTACCAG
AGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACC
AGTAAGAAGGACACATGCTCCACTACCCCCACAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCAT
TCTGAGTGAAGTAACCCAATCACAAAGGAACTCACACATTATGTACTTCA
CTGATAAGTGGATATTAGCCCAAAACTTAGGATACCCGTATATAGATTCG
TTTTGTCTAACCGGATGAAATTCCTGGAGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_o13.b1 MSMg01no328_o13.b1 CHROMAT_FILE:
MSMg01no328_o13.b1 PHD_FILE: MSMg01no328_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:11 2005
         (374 letters)



>mm_chr14_100934563_100935337
          Length = 775

 Score =  673 bits (348), Expect = 0.0
 Identities = 363/368 (98%), Gaps = 1/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctctgatt-gacagtttgatctggtttcaattttgggttagtgaggttgatgtg 65
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattcctctgattggccagtttgatctggtttcaattttgggttagtgaggttgatgtg 515

                                                                       
Query: 66  aagggtgtgttagactatatcacattagacagtgaaagaggataatgtgcaaggaggcaa 125
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 514 aagggtgtgttagactatatcacattagacagtgaaagaggagaatgtgcaaggaggcaa 455

                                                                       
Query: 126 aggtgagcaagaagacagcactctgctgtatctgcacatgtagacatatccccacatata 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aggtgagcaagaagacagcactctgctgtatctgcacatgtagacatatccccacatata 395

                                                                       
Query: 186 tttatgacatgtaaacacagtttttatacagatgttcattataatattgcttacattaga 245
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 394 tttatgacatgtaaacacagtttttatgcagatgttcattataatattgcttacattaga 335

                                                                       
Query: 246 aaatagtcacaatttcttgttgaagagtaatttaagtgattggtagtatgtcaataagat 305
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 334 aaatagtcacaatttcttgttgaagagtaatttaagtgattggtaatatgtcaataagat 275

                                                                       
Query: 306 ttgaagatatgcaagcaataaaacatttcatcatataataaatgtccctgatataccaat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttgaagatatgcaagcaataaaacatttcatcatataataaatgtccctgatataccaat 215

                   
Query: 366 atgatggc 373
           ||||||||
Sbjct: 214 atgatggc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 775
Length adjustment: 9
Effective length of query: 365
Effective length of database: 766
Effective search space:   279590
Effective search space used:   279590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)