BAC Information

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BAC

Clone NameMSMg01-329G06
Chromosome14 (Build37)
Map Location 48,192,824 - 48,351,781
singlet/doubletdoublet
Overlap geneLOC100042787, Ktn1
Upstream geneLOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730
Downstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329G06.T7 (MSMg01no329_g06.b1)MSMg01-329G06.TJ (MSMg01no329_g06.g1)
ACCAG446238AG446239
length732737
length of high quality
(start - end)
289 (61 - 349)339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no329_g06.b1 PHD_FILE: MSMg01no329_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:49 2005CHROMAT_FILE: MSMg01no329_g06.g1 PHD_FILE: MSMg01no329_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,351,493 - 48,351,781)(48,192,824 - 48,193,162)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCGAACAATCCGCGGAATTCCAATTG
TATCACTCCTACTGTCTGCAGGCAGGAGAGCGTCACCTACCACTGACACT
TCCGCCACAGACATGCATGGTTTAACTACACCCATACTGTCTGAGGAACT
GCACTGCCATACTAAAATTACATCTTTTCTGTTTTGATTCCGAAGTTAAA
ACTTAAAGTAACACACCAAATTAAATAATACACGTCTCAACCTTAAGAGA
TGTCCTCTCTGGGCGGCACACACTTAATCCCAACTCCAGAGGCAGTTGCA
TGCATTTGAGGTCTTTTGGTCTACACAGAGAGTTCCAGGCCAACTAAGGT
TCTGAGACCCCATCTCAAGACAAAACAAAAACACTTGTTACTCTAACACA
AATTTCCCCCCCCCACATTTAATATCTAATCTGTTTTTAAATAATCTGAA
ATTGCTCAAGAACTTCTCAATTCTTAGTCCTTTTACTAATAACAATCATA
ATCTCTAATTATGCACCACAATAATATTTTTCACGTATCACACTCTATTC
TGTCACACTTCTTTAATACATTTCCCCCCATGTCTTACATTATCACTCTT
TTGCTCATTGCTCCCCGTTTTACCCTTCCATCCCCTCCTTCCCTTTTTTT
TTTGATTTTCCCCATTTCTTTAATGTTACATTTTTCCTTTTTCCCTTACC
CCTATCATTCCTTCCTTTTCATACTCTGCTTA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATTAGAGATGTGTTGCTTACTC
TGTGTGTCTGTAAATAAAGGAGAGTGAAGGAGAGAAAGGGAGAGGAACAG
AGACCCTTCAGTAGAGACTAATTATCAAAAACCCACTGGTTTCTTGGACA
GTTCAACCTTAAGTCATCTTCCAGCTTCACACACCACCTCACCTCTGACC
CCTGACCTCTACACCCCTGACCTCTCCACATCCACAATAACACAAAGTAC
CCTCCCTGTTCAGAGTCCCATAGCACAGAGTGGTTTTTGCTCTGTAGCCA
TGACTATAGTTCATAACAATCATTGACAGATTGTCTTTATTTTAGTCATT
GCAATCCACAGGGGTAAGCCCCCAAGGCTGTAGTCACCCTAGCATCTATG
ACACAGTACTCACCTGGAATACTTAGTCCCTGCGTCTTAGCTGGCTGACA
GGCATTCATCCACATGCCCCTGATTTAACATAAACACATACAGGTTTTTG
TTCTTAGCCAGCTATCTAGAACATTGTGTCATAGATTGATACACTTTCTA
CTTCGTTATAGCCTCGGCATATTGATGTGGTTTCTGTCGGTTGTTTCTTT
GCTTACTACATGTGATCCCCTGCCCTCCTTCCCTGTATTTTCCTCGTCCA
TTCCCCCCGCGCTTTGCTTATTTCCTTCCCCCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_g06.b1 MSMg01no329_g06.b1 CHROMAT_FILE:
MSMg01no329_g06.b1 PHD_FILE: MSMg01no329_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:49 2005
         (289 letters)



>mm_chr14_48351381_48352069
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtctgcaggcaggagagcgtcacctaccactgacacttccgccacagacatgcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 actgtctgcaggcaggagagcgtcacctaccactgacacttccgccacagacatgcatgg 342

                                                                       
Query: 61  tttaactacacccatactgtctgaggaactgcactgccatactaaaattacatcttttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttaactacacccatactgtctgaggaactgcactgccatactaaaattacatcttttct 282

                                                                       
Query: 121 gttttgattccgaagttaaaacttaaagtaacacaccaaattaaataatacacgtctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gttttgattccgaagttaaaacttaaagtaacacaccaaattaaataatacacgtctcaa 222

                                                                       
Query: 181 ccttaagagatgtcctctctgggcggcacacacttaatcccaactccagaggcagttgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 221 ccttaagagatgtcctctctgggcggcacacacttaatcccaactccagaggcagctgca 162

                                                            
Query: 241 tgcatttgaggtcttttggtctacacagagagttccaggccaactaagg 289
           ||||||||||| |   |||||||||||||||||||||||||||||||||
Sbjct: 161 tgcatttgaggccagctggtctacacagagagttccaggccaactaagg 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no329_g06.g1 MSMg01no329_g06.g1 CHROMAT_FILE:
MSMg01no329_g06.g1 PHD_FILE: MSMg01no329_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:49 2005
         (339 letters)



>mm_chr14_48192624_48193362
          Length = 739

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgattagagatgtgttgcttactctgtgtgtctgtaaataaaggagagtgaaggagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgattagagatgtgttgcttactctgtgtgtctgtaaataaaggagagtgaaggagaga 260

                                                                       
Query: 61  aagggagaggaacagagacccttcagtagagactaattatcaaaaacccactggtttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggagaggaacagagacccttcagtagagactaattatcaaaaacccactggtttctt 320

                                                                       
Query: 121 ggacagttcaaccttaagtcatcttccagcttcacacaccacctcacctctgacccctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacagttcaaccttaagtcatcttccagcttcacacaccacctcacctctgacccctga 380

                                                                       
Query: 181 cctctacacccctgacctctccacatccacaataacacaaagtaccctccctgttcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctacacccctgacctctccacatccacaataacacaaagtaccctccctgttcagag 440

                                                                       
Query: 241 tcccatagcacagagtggtttttgctctgtagccatgactatagttcataacaatcattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccatagcacagagtggtttttgctctgtagccatgactatagttcataacaatcattg 500

                                                  
Query: 301 acagattgtctttattttagtcattgcaatccacagggg 339
           ||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 acagattgtctttattttagtcagtgcaatccacagggg 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)