BAC Information

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BAC

Clone NameMSMg01-330C09
Chromosome14 (Build37)
Map Location 47,667,136 - 47,847,222
singlet/doubletdoublet
Overlap geneSamd4, Gch1
Upstream geneLOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1
Downstream geneWdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330C09.T7 (MSMg01no330_c09.b1)MSMg01-330C09.TJ (MSMg01no330_c09.g1)
ACCAG446782AG446783
length766779
length of high quality
(start - end)
239 (124 - 362)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no330_c09.b1 PHD_FILE: MSMg01no330_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:49 2005CHROMAT_FILE: MSMg01no330_c09.g1 PHD_FILE: MSMg01no330_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,667,136 - 47,667,372)(47,846,933 - 47,847,222)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AAGTTTTATCGCAGTGGACCTGGAGAGGTGTCTTAGCAATTAAAAGCACC
GGCTGCACTTCCATAGGAACCGGGCTGCATTTCCTGCACCCACATGGCAG
CTCACAACTGTCTGTAACTCCTGTCTCACAGGACCCAATGCCACCTTCTG
GGCACTGCACACACAGAACACAGAGACATACATGCAGGTAAAGCACCCGT
ACACGTAAGTAAGATAAATGGACAAAGTTCAAAGTTAACAAATTTCTGTG
AGAAACAGGCAGCTTCTTGAGTTTAAAATGTAGGTAACTAAAAAGCTGAA
AGCTATCCCTTTTTCTCTGCACCCACCCAACCCAAGCTTGAGTGAGAACC
CATGTTATATGGTCAGACGGGGGAGAAACAAAAATATCAGTTAGATAGGG
GTCCTTATTGCCTTATTGGAACACAAACATCCAACATCCCCCAGCACTCC
CAGTGGTAGCAAGAGAAATCATGGCTGATTTAAACTTGAGGGAATCACAG
AAAATTCTCTGACTGTTCCTAAACCGACCCGGATTACTTAGGAAAGTGTC
TCTCGACCAAGAAATGATCAGTCACCACTGCCGATTGCCAGCGCCCCTGG
TTAACCTACAAAGGAACTGGAAGATATTTGTAATTCACAAAGGCTGAAGT
TCCCATTAAAAAAAAAAAGCCAATTTCAGATCTTGCTGAAGGCAAATGAA
AACCAAATCCAAATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAGCCAGGACTACACAGAG
AAACCCGGTCTCATAAAAACTAAATAACACCCAACCAGTTAATTAACAAT
TCGTTTTGAACTAAACATGAAGGATGGTGGAGGAGCACAAATTCAGGTTA
GCGCTGACAGACATGGCCCACCTGAAGAGTCAACTCTTTTAGTCATGGAA
CGAAAGTCAGCCACACATCAACAGATTTCCCAACTACCTTGCTAAAAGCA
CCAGGCAAGTGTGTTACAGCAAGGTATAACAATCTCTTCTATAGGTGTTA
CATATTGCTGTATTTANATCNNTACCCTGTNGCAGNTCACAGGTCTTTGA
AAATTATTCATTATTCCAATCTAGAGAAGCCAAAAAATAAGATTTGAGAT
TGTTAGGTCACATGCAAAAATAAAGTTAAATGGTTGTTAAGAGGCCTACA
ACTACCTGAGATAGTTTAGGCTTCTGATGTATGACACACACACACACATC
ATACCATGCAACATACCCAACACACACTCTCACACACTCACAACTCTCAT
ACTAATACACATACTCTATGTCCTCTGTATCTCCCCTTGCACACATAATC
TGTGCACTCTTAAACCCACTATGTATTTATCCACCTTGCTCACTCCCTTA
AAACACCCATTAAAGCCTAGCCTAAGCCCTATCCTTATGGGTAACAAGGT
TTGCTAAATTATGGTAACTATGCTGGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_c09.b1 MSMg01no330_c09.b1 CHROMAT_FILE:
MSMg01no330_c09.b1 PHD_FILE: MSMg01no330_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:49 2005
         (239 letters)



>mm_chr14_47666936_47667574
          Length = 639

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgcatttcctgcacccacatggcagctcacaactgtctgtaactcctgtctcacagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgcatttcctgcacccacatggcagctcacaactgtctgtaactcctgtctcacagga 260

                                                                       
Query: 61  cccaatgccaccttctgggcactgcacacacagaacacagagacatacatgcaggtaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaatgccaccttctgggcactgcacacacagaacacagagacatacatgcaggtaaag 320

                                                                       
Query: 121 cacccgtacacgtaagtaagataaatggacaaagttcaaagttaacaaatttctgtgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacccgtacacgtaagtaagataaatggacaaagttcaaagttaacaaatttctgtgaga 380

                                                                    
Query: 181 aacaggcagcttcttgagtttaaaatgtaggtaactaaaaagctgaaagctatccct 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaggcagcttcttgagtttaaaatgtaggtaactaaaaagctgaaagctatccct 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no330_c09.g1 MSMg01no330_c09.g1 CHROMAT_FILE:
MSMg01no330_c09.g1 PHD_FILE: MSMg01no330_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:49 2005
         (291 letters)



>mm_chr14_47846679_47847369
          Length = 691

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaccagccaggactacacagagaaacccggtctcataaaaactaaataacacccaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 544 cagaccagccaggactacacagagaaacccggtctcataaaaactaaataaaaaccaacc 485

                                                                       
Query: 61  agttaattaacaattcgttttgaactaaacatgaaggatggtggaggagcacaaattcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agttaattaacaattcgttttgaactaaacatgaaggatggtggaggagcacaaattcag 425

                                                                       
Query: 121 gttagcgctgacagacatggcccacctgaagagtcaactcttttagtcatggaacgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gttagcgctgacagacatggcccacctgaagagtcaactcttttagtcatggaacgaaag 365

                                                                       
Query: 181 tcagccacacatcaacagatttcccaactaccttgctaaaagcaccaggcaagtgtgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcagccacacatcaacagatttcccaactaccttgctaaaagcaccaggcaagtgtgtta 305

                                                             
Query: 241 cagcaaggtataacaatctcttctataggtgttacatattgctgtattta 290
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagcaaggtagaacaatctcttctataggtgttacatattgctgtattta 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)