Query= MSMg01no330_d09.b1 MSMg01no330_d09.b1 CHROMAT_FILE:
MSMg01no330_d09.b1 PHD_FILE: MSMg01no330_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:53 2005
(719 letters)
>mm_chr14_112912649_112913767
Length = 1119
Score = 1338 bits (692), Expect = 0.0
Identities = 711/718 (99%), Gaps = 3/718 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcctttcca-tttgtatctccttgatctccttttgttgtcttattgctctgac 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcttcctttccaatttgtatctccttgatctccttttgttgtcttattgctctgac 261
Query: 64 taggacttcaagtagcatattgaataagtagggaaagagtgggcaatcttgtagatgttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taggacttcaagtagcatattgaataagtagggaaagagtgggcaatcttgtagatgttt 321
Query: 124 agatgtgtgtatttagatgtcataaatgaagaacgtggggatataagcaaagcatctata 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agatgtgtatatttagatgtcataaatgaagaacgtggggatataagcaaagcatctata 381
Query: 184 tccatgcaaggaaatacacacacatgacaataaaattttccttgttaattaata--atta 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 tccatgcaaggaaatacacacacatgacaataaaattttccttgttaattaatatgatta 441
Query: 242 ttaaaattgtgaccatgtaagccaaaaataaatatgatgtgacaaaaccaggatagaagc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttaaaattgtgaccatgtaagccaaaaataaatatgatgtgacaaaaccaggatagaagc 501
Query: 302 catgtgaattccattaacatttcttataacaacaactgacatacttttagccttctcatt 361
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 502 catgtgaattccattaacatttcatataacaacaactgaaatacttttagccttctcatt 561
Query: 362 aacagtaagaatgccacttatcaaaattatatctaaaaacatgtatattttcataaatag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aacagtaagaatgccacttatcaaaattatatctaaaaacatgtatattttcataaatag 621
Query: 422 tctcacttatcttattgagatcaacagaaaggaaaatcaagatagcacatccagccacta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tctcacttatcttattgagatcaacagaaaggaaaatcaagatagcacatccagccacta 681
Query: 482 attttcactgtggttaatttttgaaaccattaatgagaccccttgtgttttgcgggctct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 attttcactgtggttaatttttgaaaccattaatgagaccccttgtgttttgcgggctct 741
Query: 542 cactaatttgaacttgttcagcaaattttgcctgcattagtagccatggcaacttcagga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cactaatttgaacttgttcagcaaattttgcctgcattagtagccatggcaacttcagga 801
Query: 602 taaatattgagtgctggccttccaactgttacacacctctaaggctcctttaagtgtata 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 taaatattgagtgctggccttccaactgttacacacctctaaggctcctttaagtgtata 861
Query: 662 gtgtatccacagagacacgagcttcctgaatagtgatgacttttaatctagttccaag 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gtgtatccacagagacatgagcttcctgaatagtgatgacttttaatctagttccaag 919
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space: 786281
Effective search space used: 786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no330_d09.g1 MSMg01no330_d09.g1 CHROMAT_FILE:
MSMg01no330_d09.g1 PHD_FILE: MSMg01no330_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:53 2005
(692 letters)
>mm_chr14_112970365_112971456
Length = 1092
Score = 1027 bits (531), Expect = 0.0
Identities = 562/581 (96%), Gaps = 17/581 (2%)
Strand = Plus / Minus
Query: 113 atgaacattgactatctgcctgtaggttcattggttgcctctgtgaagacatatatatat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 atgaacattgactatctgcctgtaggttcattggttgcctctgtgaagacatatatatat 1033
Query: 173 gtata-ctatatatactatatatactatactattacactatatatactatatgtgtaata 231
||||| ||||||| | |||||| ||||||||||||||||||||| |
Sbjct: 1032 gtatatgtatatatgc-atatat-------------actatatatactatatgtgta--a 989
Query: 232 tatatatatagttttataatatatatttaataatataaacttacaaatatatagttttat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 tatatatatagttttataatatatatttaataatataaacttacaaatatatagttttat 929
Query: 292 aatacatattcaataatatacatttacatatataatgtatattcaaaagaagttctagat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 aatacatattcaataatatacatttacatatataatgtatattcaaaagaagttctagat 869
Query: 352 gtatgatctgcaagtgacatttgtgggtgggttctcgaaattctaaaatatctaagctca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gtatgatctgcaagtgacatttgtgggtgggttctcgaaattctaaaatatctaagctca 809
Query: 412 taatgaataaggttagtgataatgttacagtataaatgagaacactaacagtaggacaca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 taatgaataaggttagtgataatgttacagtataaatgagaacactaacagtaggacaca 749
Query: 472 atgtgacagcagttcacactaacagtcactgcaggctctcttacggtattattttaagtg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 atgtgacagcagttcacactaacagtcactgcaggctctcttacggtattattttaagtg 689
Query: 532 attaggttctggtgactatttaatagatattttttgtccaactaacaactattgtaagat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 attaggttctggtgactatttaatagatattttttgtccaactaacaactattgtaagat 629
Query: 592 ttgtaaatttttctaagtgtaatggacaaagatgagagtgaaaatgtatttcaaggatta 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttgtaaatttttctaagtgtaatggacaaagatgagagtgaaaatgtatttcaaggatta 569
Query: 652 aaacagaattcaagcacttgaaaggttttatttcgtctaag 692
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaacagaattcaagcacttgaaaggttttatttcgtctaag 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
