BAC Information

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BAC

Clone NameMSMg01-330D23
Chromosome14 (Build37)
Map Location 13,477,875 - 13,478,236
singlet/doubletsinglet
Overlap geneCadps
Upstream genePtprg, LOC100042441, 3830406C13Rik, EG667072, Fezf2
Downstream geneEG432822, LOC100042022, LOC100042026, EG328354, Synpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330D23.T7 (MSMg01no330_d23.b1)MSMg01-330D23.TJ (MSMg01no330_d23.g1)
ACCAG446855AG446856
length750798
length of high quality
(start - end)
361 (390 - 750)---
definitionCHROMAT_FILE: MSMg01no330_d23.b1 PHD_FILE: MSMg01no330_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:55 2005CHROMAT_FILE: MSMg01no330_d23.g1 PHD_FILE: MSMg01no330_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGCG
GAATTCCCACTGCCTTCTTTGAAGTCTTTCTCATCCTCCCATTTAAGAAA
AGCCACATAGAGAAGCTTTCCCAGTTATTAAAAGGGCATGTATCCTGGGA
AAGATGGCTCAAGAGGTTACTAGCACATTGATGTGAATTGATCGGACAGT
TAGAAACAAAACCATTCTATAATGTCAAGAACATGTGAATCCAAAGAGTT
GTACAAACATGTTATCCAAACATGAGCTATGTTTTTATGCCCTTCAACTT
CTCCTCTCATGAATGAAGGAGTGCTAACAGACTACATTTTATAAAACAAT
GATCCTGTTATCACTTGTTTATTCGTGCCCCCCGCCCATTTGAATGGAGG
TCTTGGCTAACACCCAATCTAGATTTCTGGTCTGCTTCTCCTTCATCATC
ATAGGAGCAGTTGGAGGTCATTACCTCAAGATGACATTCTATTTTTGCAT
TATGTTTGCATTATGATTTTAAAGTTTATTGCATAAAAACTCTTAGATGC
ATATTTCCTATTATAGGGTGAATATTTATAAGCCATCTAAGGTAATAACA
GAAAACAGAGTGGTGGGATATGGAAATTCATTTTTTTTTCAGCTCAGGCA
CAGCCTGGGAAAAATTAATTGCATTGTTTTGCCTAGAGGATATGCTTTAT
TGCTTGGGGAATATCAAATGTCAACCTTCTCTTATTCAAGATGTATTCAT

AGGGGGGGANNANNNNNNNNNNAANCCACCCCNTACNCCNTCCTCNNNNC
AAAGAAGAAGTGGGAAGCCTGGNGGNGNCTGGATTCCAACCCGNNNGNNN
NNNNGNNGGATAACAAAAAAAAGGGGNNGANGANNGAGNGNNNGNNNNNN
AGNNNNGNANANAANAAGNNCCCCAGNNNNNAANNAGNANNAANAAGGGG
AAAAAANNNNGNNGAAGAAGGAANANANNNNANANNNAAAGGNAAAGGNN
NANANAGGAGGGNANAGGNANGGAAAANAAGANANAANANNNNNNNNNAA
AGGGTTTTTTGTNTGNAGANNGNATTATGGATANATGAAAATGTNNTTAA
ANAAGNATGATAANGGAATTTTTATGATTTTAAANNGANNNAGANNAGAA
ANANGAGTTTTTTTTTTTTCCCCCCCCCCCCCCGTNGNGTTTGGTATTTA
TTGAAAGGGTNTNTATATAAGAAAAATAAAAAAAATACTCGTGGGGGGTG
TGAGGTAGNAATATATTTGTGATATCTGGAACTCTTCATTTTTATAATTT
TTAGATGTTACCCCAAAATTTGATTGGAGTGAGGAGNATATTCCTTGGTT
TCTTTTGGGGAGTTAAGAGAGATAGAATAAAGAAAAGGCTGAAACCATAA
AGAGTCACTGAAAAGGAGACAGTCAGGGAATCCCTGGCTTGACTCACTGG
GATGGTAAAGGAATATTTTTTTTTTTTATTTTAGAGATTGGAGAACGTAG
GGAGACCTGCTAATACGGAGGAGGGCANCTGCATGTAGGTGATGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_d23.b1 MSMg01no330_d23.b1 CHROMAT_FILE:
MSMg01no330_d23.b1 PHD_FILE: MSMg01no330_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:55 2005
         (361 letters)



>mm_chr14_13477675_13478436
          Length = 762

 Score =  677 bits (350), Expect = 0.0
 Identities = 359/362 (99%), Gaps = 1/362 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaatggaggtcttggctaacacccaatctagatttctggtctgcttctccttcatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttgaatggaggtcttggctaacacccaatctagatttctggtctgcttctccttcatcat 503

                                                                       
Query: 61  cataggagcagttggaggtcattacctcaagatgacattctatttttgcattatgtttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cataggagcagttggaggtcattacctcaagatgacattctatttttgcattatgtttgc 443

                                                                       
Query: 121 attatgattttaaagtttattgcataaaaactcttagatgcatatttcctattatagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attatgattttaaagtttattgcataaaaactcttagatgcatatttcctattatagggt 383

                                                                       
Query: 181 gaatatttataagccatctaaggtaataacagaaaacagagtggtgggatatggaaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaatatttataagccatctaaggtaataacagaaaacagagtggtgggatatggaaattc 323

                                                                       
Query: 241 a-tttttttttcagctcaggcacagcctgggaaaaattaattgcattgttttgcctagag 299
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 attttttttttcagctcaggcacagcctgggaaaaattaattgcattgttttgcctagag 263

                                                                       
Query: 300 gatatgctttattgcttggggaatatcaaatgtcaaccttctcttattcaagatgtattc 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 gaaatgctttattgcttggggaatatcaaatgtcaaccttctcttattcaagacgtattc 203

             
Query: 360 at 361
           ||
Sbjct: 202 at 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 762
Length adjustment: 9
Effective length of query: 352
Effective length of database: 753
Effective search space:   265056
Effective search space used:   265056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)