BAC Information

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BAC

Clone NameMSMg01-330G03
Chromosome14 (Build37)
Map Location 15,791,998 - 15,792,298
singlet/doubletsinglet
Overlap geneNek10
Upstream geneThoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7
Downstream geneLrrc3b, LOC667205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330G03.T7 (MSMg01no330_g03.b1)MSMg01-330G03.TJ (MSMg01no330_g03.g1)
ACCAG446956AG446957
length784925
length of high quality
(start - end)
297 (65 - 361)---
definitionCHROMAT_FILE: MSMg01no330_g03.b1 PHD_FILE: MSMg01no330_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:04 2005CHROMAT_FILE: MSMg01no330_g03.g1 PHD_FILE: MSMg01no330_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTGCCTTACCACGCTCTCTGTTTTGTTTAAGCACAGCCACCCAGGATCT
CCTCCTCACCTCATCACTACCCGATGCTGGCTACAGAAAAGCCAAACGCA
TCTACAGGGTTCACTTTCCTATTTATCTTTACTATAGAATGCAGTATTGT
GGTCTTCCTTTATATTTAAATTTATCTTCTGGTTTCTACATATTTTAGAA
GATTAATACAACTTTTCACATTAATTAAGAAGCTGAGGAAAATCCTAAGC
AAAGTAAATCAAAAAAAATGCCAGCTTTACTTAGTGCCTGTAAGAGAAAT
AGAAATTATACTTCATAGTTCTCTCACCCTAACTCAGAGAAGCCATTAGT
ACCATCTGGAAAAGAGCAAAGAACGTTTTGATTTCTTTCCCTCTGCTTTG
TGTGACAGGGTTGTTTGCTCTGCCCCATTCTCAGCCCCGCCCTGGTCTGC
CTTGTGCCACTTTGCCCAGTCTATACTTGTAGCTGCCGTGAAAACTGTGC
TTCCTGCTGGCTTGTCACGCAGCATATCCCACTATGTGACACAGATACCG
ACAAGGGCTTTTAAGGAAAAGTTCTCAGCCCCCCTTGGAACAGGGTTTTT
GGAATGTTTTGGCACTTGGTGTTCCCTGAATCCTTAAATACATGGGTAAA
GGCATGAACTGTACAGGGGTCCCTTGTAACTTGGGTGGAAACTTTTTCCC
CACTAAACTCCTGAAATCAAAAATAATTTGGCAA
AGAGAAAAAGAGGGAGGAAGGGCCTTTCCGCCGGGAGAGATAAAGCGAAG
AAGAGGGAGGCAGGAGGAGTNTGGTAGGGAACCGGNNNGNNNNNNNNNNG
NTGAGCAAAAAAGAGGGNGNNGNNGGGNGNNNNGNNNGNNNNNNGNGNNN
NNTTTTCGCGGGNNNGGGNGGGNNGNGNNNGGNNNNNGNNNNNGNNGGGG
NGGGGGGGNGGGGGGNNGGGGGGGGGGGGGGGAGNGNGGGGGGGGGGGGG
GGGNNGGNNNNGGGGGGGGGGGNNGGGGGNGNGNNGGGGATTGTGTTGGN
GGGGGGAGGNGGGGTNGGGNGGNNGNNGGGGGGNGNGNGGGNNGAAGGGG
GGGGGNNNNGGTTGTAGGTGGTTTAAAAAGAGGAAAAAAAAGAAGAAGGA
GAAGAAAAAGTTTTGTTTGTTTTCCCCCCCAGCCGCCGAAAGAAAAAAGA
AAGAAGAAGAAAAGGGAGGAAGATGCGGGCTAAAAAAAAAAAAAAAAAAA
AGAAGAGGGGGGGGGGGGGGGGGGGAGAAGGAAAAAGGGAGGGGAGGAAA
GGGAAGAGGGGAGAGAAAAAAAGAAGAAAGGAGGAGGGGAAGGAGAGGGA
GATAAGGAGGAGAGAGAGGGGGGAGAGAGAAAAAGAGAAGAAAAGAGAAG
AAGAAAGGAGAGAAGGAGAGGAAAATGAAAAAGGAGAAAAGGAGAAAAAG
AAGAAGATAAAGAAGAGAGGGAGAAGAGGGGGTAAGAGAGAAAGGGAGGG
AGGGAAAAGAAGGAGGAAAGGGAGAGGGGGACAGGGGGAATGGAGGGTGA
GGGTAGAAGAGGAAAGGAGGGGAGAAGAAGGAGAGAAAAAAGAGAAGAAA
GGTGAGAGGGAAAGAGAAAAAGAGGAAGAGAAGGGAAGAAAAGGGGGGAG
AAAGAAAAGAGGGAGGAAGAGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_g03.b1 MSMg01no330_g03.b1 CHROMAT_FILE:
MSMg01no330_g03.b1 PHD_FILE: MSMg01no330_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:04 2005
         (297 letters)



>mm_chr14_15791798_15792498
          Length = 701

 Score =  509 bits (263), Expect = e-148
 Identities = 290/301 (96%), Gaps = 4/301 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctctgttttgtttaagcacagccacccaggatctcctcctcacctcatcactacccga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 501 ctctctgttttgtttaagcacagccacccaggatctcctcctcacctcatcactaggtga 442

                                                                       
Query: 61  tgctggctacagaaaagccaaacgcatctacagggttcactttcctatttatctttacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctggctacagaaaagccaaacgcatctacagggttcactttcctatttatctttacta 382

                                                                       
Query: 121 tagaatgcagtattgtggtcttcctttatatttaaatttatcttctggtttctacatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaatgcagtattgtggtcttcctttatatttaaatttatcttctggtttctacatatt 322

                                                                       
Query: 181 ttagaagattaatacaacttttcacattaat----taagaagctgaggaaaatcctaagc 236
           ||||||||||||| |||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 321 ttagaagattaattcaacttttcacattaatacactaagaagctgaggaaaatcctaagc 262

                                                                       
Query: 237 aaagtaaatcaaaaaaaatgccagctttacttagtgcctgtaagagaaatagaaattata 296
           ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 261 aaagtaaatcaaaaagaatgcgagctttacttagtgcctgtaagagaagtagaaattata 202

            
Query: 297 c 297
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 701
Length adjustment: 9
Effective length of query: 288
Effective length of database: 692
Effective search space:   199296
Effective search space used:   199296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)