BAC Information

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BAC

Clone NameMSMg01-330K22
Chromosome14 (Build37)
Map Location 57,935,218 - 57,935,532
singlet/doubletsinglet
Overlap geneCryl1
Upstream geneAtp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140
Downstream geneLOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330K22.T7 (MSMg01no330_k22.b1)MSMg01-330K22.TJ (MSMg01no330_k22.g1)
ACCAG447172AG447173
length767767
length of high quality
(start - end)
322 (45 - 366)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no330_k22.b1 PHD_FILE: MSMg01no330_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:27 2005CHROMAT_FILE: MSMg01no330_k22.g1 PHD_FILE: MSMg01no330_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAATTGCTGGCGGTAGTGGCTCATGCCTTTAATCCCAGCACTTGA
GAGGCAGAGGCAGGCGGATTTCTCCCTTCCAGGCCAGCCTGGTCTACAAA
GTGAGTTCCAGGACTATACAGAGAAACCCTGTCTTGAAAAACCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGGAATTCTTAATTAACAATTAAGTTT
TGTCATAATCTACTTCCCAAGTGTTCATTGCTTGGTTTTGCTGCCCAAAT
CTGGGCACGCCTGCGGTATTGGTTGTGTGTGACCGGATCGTTTGTTAGAT
GTGGCGTTCATTCTTTTTTCCTCTTACCCCACCCCCCCCAAACAAACAAA
CAATATAAACCAGCTCTGTAGGGAGATGTGGACAAAAAATAATTAGGCAG
AGGCAAGCTGGTTGCTTGCTGTGGTGATGGCAGCCACCGGAAGTATTTCA
CACAAAGCAGCTTTTTATAGAAATGCACCCCTCCAAGGCAGACTGACTGG
AGAAGCAGGAGGGTATAGAGGAGAGACAAGTGAGTGGCCACACCCCTCTG
CCTTAGCTATCTGACCCATCTATATGCCCTTCAGGGCAAGGAGGGCGGCA
GCCTTTGGGGTCTGAGGTCCTGACTAAAATGAGCTACCTTTGTGGACAGC
AGGGAGCTGAGCCCAGCGTTTGACATGGCTTGAAGCTTGAGGTCTGTGAC
TCCATCCATCTCACACA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACAGGGG
TACCAGTGAGTACAGCTTTACAAGGCCAGTCTGGTCTTGAACTTTCTAAC
GAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGG
TACGCCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAG
TAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTTTCTA
GTGTTAGGAACCTTTTTGTTCTTTTTCACATGTTATCAAGTGATTAAGAT
AGGGCTGAAAATTCTGTTTGTTTTCCCCCCCACCCCCCAGAAGTAAAGCG
GGGAGAGAGAGTAGGAGCAAAGAGGAAATATGATACACAAAATAAGTATA
CAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTCAGGTAAG
AATACCTGGGGAGAGATTAGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAA
AGATCAATTATCGGAGGTCTCTAGGAGAAGGAGCCTATACTCATCACTAG
ATGGGTTCAAGGAGCCAGCTCTTAGTAGCTCTGAATCAGATGACGAATTC
TCCTCTGAAGAAACAGACTGGGAGGAAGAAGCAGTTCGCTATGAGAGAGA
AAAGTGCCAGCCAGATAAAATGCGAGCTAATTGGTTAATGAAAAAGCCAA
AAGTGGCTGTCGAAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_k22.b1 MSMg01no330_k22.b1 CHROMAT_FILE:
MSMg01no330_k22.b1 PHD_FILE: MSMg01no330_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:27 2005
         (322 letters)



>mm_chr14_57934838_57935559
          Length = 722

 Score =  468 bits (242), Expect = e-136
 Identities = 297/326 (91%), Gaps = 22/326 (6%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaattgctggc-ggtagtggct-catgcctttaatcccagcacttgagaggca 62
           ||||||||||||||| || ||| |||| | | ||||||||||||||| ||||||||||||
Sbjct: 695 gaattcttaattgct-gctggtggtgg-tgcgtgcctttaatcccaggacttgagaggca 638

                                                                       
Query: 63  gaggcaggcggatttctcccttccaggccagcctggtctacaaagtgagttccagga--- 119
           |||||||||||||||||   |||||||||||||||||||||||||||||||||||||   
Sbjct: 637 gaggcaggcggatttctgagttccaggccagcctggtctacaaagtgagttccaggacag 578

                                                                       
Query: 120 ------ctatacagagaaaccctgtcttgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaa 173
                 ||||||||||||||||||||| ||||||||         |||||||||||||||
Sbjct: 577 ccagggctatacagagaaaccctgtctcgaaaaacc---------aaaaaaaaaaaaaaa 527

                                                                       
Query: 174 aaaaaaaggaattcttaattaacaattaagttttgtcataatctacttcccaagtgttca 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaaaaaaggaattcttaattaacaattaagttttgtcataatctacttcccaagtgttca 467

                                                                       
Query: 234 ttgcttggttttgctgcccaaatctgggcacgcctgcggtattggttgtgtgtgaccgga 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttgcttggttttgctgcccaaatctgggcacgcctgcggtattggttgtgtgtgaccgga 407

                                     
Query: 294 tcgtttgttagatgtggcgttcattc 319
           ||||||||||||||||||||||||||
Sbjct: 406 tcgtttgttagatgtggcgttcattc 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)