BAC Information

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BAC

Clone NameMSMg01-330M14
Chromosome14 (Build37)
Map Location 54,458,550 - 54,632,565
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330M14.T7 (MSMg01no330_m14.b1)MSMg01-330M14.TJ (MSMg01no330_m14.g1)
ACCAG447248AG447249
length751747
length of high quality
(start - end)
293 (73 - 365)235 (128 - 362)
definitionCHROMAT_FILE: MSMg01no330_m14.b1 PHD_FILE: MSMg01no330_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:34 2005CHROMAT_FILE: MSMg01no330_m14.g1 PHD_FILE: MSMg01no330_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,458,550 - 54,458,839)(54,632,331 - 54,632,565)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCTCTTTTCCTCAACTGCCCCTCAGTTTTTACTTCCCTTACTCC
TCTCAGAAGTGCATAATTTTAACCCTCTGAGCCTCTACCCATTAACTCAC
AGGCATTCTGCTCTGTCAGTTTCTCTAAGACTGATACACGAGGCAAATGC
AAGTGATTACAATAGAGCACCTTTGTCTTAAGAAATGTGTGCCGAGGGAT
CTATAGGATGAAAACAGAAGCAGGGATGAACAGCTCTTCAAAGACTTAAC
AACAGAAATAATAAAGAAAAGAAGGTCCTTTGTGTCTGTGAAATGATGGA
TTTAAGAAGATATATTATTTTCATGCGACCACCTACGAATAACGTATTTT
AGCAAAACTCATTTGGAAAAAGTACTTTCAATATAATTTTAAAATATGAA
CATAATTTCTGGGTTGTTAGAATAAAAGTATTAAAGGATAAACTCTCACG
CTCCAAAAATTTCTGGCAGGATTACCAAGCAGTCTTTATTGGAGGCAAGA
ATTCATTATACATACTCATCTTTACACACACACACACACACACACACACA
CACAGTAGTAAAGTCTATACAGATAAAACTTTAGAAATACACTTCTAATA
ACTCATCTCCAACTCAAACAAATTTCCTAAATGAAGATGGTTGTATCTTC
TGTAGTCCGTGGTTCTACATAAAGAGTGTCAAAATACAAAATAAACAAGA
A
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCGAAAAACAGTGATGAGAAGTGGAAAGTGGTTTT
TAATGTGATTGTGTTATTGTTGAACGAAAAAAACCCTTATCTATACACAC
TGCCATCCTATGGGAACATTTATTTTTATCTCTACTCATTATCTAAACCA
GACAGGGCATTATTAAATTTCGACACAAAAGACCCTTTAAAACTGGTCGG
CAGGGATAAGAGGCTAGAGCTGGAGCAACAAATGAATTAAAGAACTAAGG
AGCAAGTGGTCCAGCAACGACCTCTTTCTTGATTCTAGATACACTCGAAG
GGGACCTGTTACCTCTTTTCTTTTCCACCTCTCCTTTCCTGGCCCTGGAT
ATAGTTTCTACACCACAAAAAGCATGCTATAGAATATTTGTTGACACCCA
CTTTAGAATTCTGGGGTTTTCTCTGTGCAGTTATTCCGTCTGGCATATTT
GATATATGAGCTAGGTTTTGTTTGTTTGTTTGTTTTTGTTTTGTTCTTGT
TTGTCAACTTGGCACAAGTTAGAGTAGCTTGAGAGGGGAGAAGCTCAATT
GAGAAAATGCCTCTATAAGCTTGGCCTGTATGCAAGCCTGGAGGGCACTT
TCTTAATTCGTGGTTGACGTGGGAGGGCCCACTCTGTTGTGACTGATGCC
ACCCTTATCCTGTTGGCCGTGGATGTCGTATGGAGGCATGATAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_m14.b1 MSMg01no330_m14.b1 CHROMAT_FILE:
MSMg01no330_m14.b1 PHD_FILE: MSMg01no330_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:34 2005
         (293 letters)



>mm_chr14_54458350_54459042
          Length = 693

 Score =  484 bits (250), Expect = e-141
 Identities = 280/290 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcccctcagtttttacttcccttactcctctcagaagtgcataattttaaccctctgagc 60
           ||||||||| |||||||| |||||||||||||||||||||||||   |||   |||||||
Sbjct: 201 gcccctcagcttttactttccttactcctctcagaagtgcataagcataaaattctgagc 260

                                                                       
Query: 61  ctctacccattaactcacaggcattctgctctgtcagtttctctaagactgatacacgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctacccattaactcacaggcattctgctctgtcagtttctctaagactgatacacgag 320

                                                                       
Query: 121 gcaaatgcaagtgattacaatagagcacctttgtcttaagaaatgtgtgccgagggatct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gcaaatgcaagtgattacaatagagcacctttgttttaagaaatgtgtgccgagggatct 380

                                                                       
Query: 181 ataggatgaaaacagaagcagggatgaacagctcttcaaagacttaacaacagaaataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataggatgaaaacagaagcagggatgaacagctcttcaaagacttaacaacagaaataat 440

                                                             
Query: 241 aaagaaaagaaggtcctttgtgtctgtgaaatgatggatttaagaagata 290
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaaagaaggccctttgtgtctgtgaaatgatggatttaagaagata 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no330_m14.g1 MSMg01no330_m14.g1 CHROMAT_FILE:
MSMg01no330_m14.g1 PHD_FILE: MSMg01no330_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:34 2005
         (235 letters)



>mm_chr14_54632131_54632765
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaacccttatctatacacactgccatcctatgggaacatttatttttatctctactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaaaacccttatctatacacactgccatcctatgggaacatttatttttatctctactc 376

                                                                       
Query: 61  attatctaaaccagacagggcattattaaatttcgacacaaaagaccctttaaaactggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 attatctaaaccagacagggcattattaaatttcgacacaaaagaccctttaaaactggt 316

                                                                       
Query: 121 cggcagggataagaggctagagctggagcaacaaatgaattaaagaactaaggagcaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cggcagggataagaggctagagctggagcaacaaatgaattaaagaactaaggagcaagt 256

                                                                  
Query: 181 ggtccagcaacgacctctttcttgattctagatacactcgaaggggacctgttac 235
           ||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 255 ggtccagcaacgacctctcccttgattctagatacactcgaaggggacctgttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)