XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAATTCAC
AGATGCTGACTTCTGTCTGTCTCAGTCTCCTGAATGTTTGGATGAATTAA
AGGTTTGTGCTACTGTGCCCAGCTGGCTTCAAAAACTTTAAAGATATGGA
TAGCAAAGGATATAATACTATTTGTACAATTCATGTCAAAACATACAAAA
ATCCAATTATGCTATAGCCAAAATAAAAAGAATACATAGTTTTTAAAATA
AAGTAGTAAAATTGGCCCTAGATATCTTTTTCTTTGCTTTCAACTCTGTT
CCCCCTGAAATTATAAATATACAAATGAAGACAAGTGCAGATAAATATGA
AAAACACCAATTTCTATAGCAGTTTGTTTGCCAAAACATAAATGGTACCA
AATTTAAAAATAGCACGCCAAGCTAGAAAAGTATTAAGGAAAATGATAAA
TTGATGATCCATAGATTCAACAATCGCAAGCATTATTTATACTAAATCCA
GGACACTAAACTTTATATGAGGAAACAAAACCATCACGAATTAGGAAATA
GCCACAAACCTTGGTAATACATAGGTGTTTGTTGATTTCATTGCGAATGG
ATAAGTAGTCTTTGTTGTTATTTGAAACACAAAAACAGTTGAGTTCCCTT
TATATCTTTGCGTGTGCACAGCATGTATGTAAATATGCATATAGTATGTG
CTCATTCTTGCATGTGATTGCAAGTGTGGACATGTCAN

AATGTGGGAGGCCTGGCGGNCGCCGGGCTGCCCCACCNCGANGACACNAN
AGAAGGATTTCAGGCACGCGAGCCNNCAGNACANGGNGGAGACAGGAGCG
GGAAANNAAGGGGTTTAGCCCCCAGCAACCAGCGGNAANCAGGGGNNCCC
AGGGNGGGNCGGNCGGNCNANGGAGAACCAGCCCCGGCCCANGGNCNGAA
GAGANCAGAGCAAGCCGGNNGCCGGNAGGGACANNCAGGGCGGGCAATTT
TTTTCACAATGCCTATCCACCCTCAAAATTTAATACAGAAATCAGGTGTG
TTGCGAAAGGGCTCTTTTTTTCTTTAACCCCCCCAAGCGCCNAAGGCCCC
GCGCGGACAGGAGCGCCCCCCCCCCAAAAGACCAGCCCAACAAGAGGAAC
GCCGACNACAACACCCCCCCCAGCAGAGCAAACACCCCAGCAAGCCCCAC
AACGCGGAACAACCAAGGCCCCAAGGCCCCCCACCCAGAGCCCAGACCAG
CCGCCACAGCCCGCCCGGGAGAAGAAGGGCGCCCACCGACAGGCAGCCAC
NACCGACGAACCGCCCCGACAGGGNACAAGGAACACCCAGCCAACCAGCG
ACCCCCCGCAGAAACCAGAACCAACACCCGACGCCCCACCCGGAGGGCCC
ACAGGCGCACCGCACCTTTTTTTTTTTTTTAGCCGCCACCCCCCCTTGTT
TACCCCCCTGCTTTTTCCCCTCTACCTTCTTCTCTCTCTTTTCCTCCCCC
TTTTTCCTCCTCCTTCCCTCC

Query= MSMg01no331_b19.b1 MSMg01no331_b19.b1 CHROMAT_FILE:
MSMg01no331_b19.b1 PHD_FILE: MSMg01no331_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:58 2005
         (689 letters)



>mm_chr14_38338804_38339895
          Length = 1092

 Score = 1236 bits (639), Expect = 0.0
 Identities = 674/687 (98%), Gaps = 3/687 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacagatgctgacttctgtctgtctcagtctcctgaatgtttggatgaattaaag 65
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 892 gaattcacagatgctgagttctgtctgtctcagtctcctgagtgtttggatgaattaaag 833

                                                                       
Query: 66  gtttgtgctactgtgcccagctggcttcaaaaactttaaagatatggatagcaaaggata 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gtttgtgctactgtgcccagctggcttcaaaaactttaaagatatggatagcaaaggata 773

                                                                       
Query: 126 taatactatttgtacaattcatgtcaaaacatacaaaaatccaattatgctatagccaaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 taatactatttgtacaattcatgtcaaaacatacaaaaatccaattatgctatagccaaa 713

                                                                       
Query: 186 ataaaaagaatacatagtttttaaaataaagtagtaaaattggccctagatatctttttc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ataaaaagaatacatagtttttaaaataaagtagtaaaattggccctagatatctttttc 653

                                                                       
Query: 246 tttgctttcaactctgttccccctgaaattataaatatacaaatgaagacaagtgcagat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tttgctttcaactctgttccccctgaaattataaatatacaaatgaagacaagtgcagat 593

                                                                       
Query: 306 aaatatgaaaaacaccaatttctatagcagtttgtttgccaaaacataaatggtaccaaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaatatgaaaaacaccaatttctatagcagtttgtttgccaaaacataaatggtaccaaa 533

                                                                       
Query: 366 tttaaaaatagcacgccaagctagaaaagtattaaggaaaatgataaattgatgatccat 425
           ||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tttaaaaatagtatgttaagctagaaaagtattaaggaaaatgataaattgatgatccat 473

                                                                       
Query: 426 agattcaacaatcgcaagcattatttatactaaatccaggacactaaactttatatgagg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agattcaacaatcgcaagcattatttatactaaatccaggacactaaactttatatgagg 413

                                                                       
Query: 486 aaacaaaaccatcacgaattagga---aatagccacaaaccttggtaatacataggtgtt 542
           ||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||
Sbjct: 412 aaacaaaaccatcacgatttaggaaacaatagccacaaaccttggtaatacataggtgtt 353

                                                                       
Query: 543 tgttgatttcattgcgaatggataagtagtctttgttgttatttgaaacacaaaaacagt 602
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgttgatttcattgtgaatggataagtagtctttgttgttatttgaaacacaaaaacagt 293

                                                                       
Query: 603 tgagttccctttatatctttgcgtgtgcacagcatgtatgtaaatatgcatatagtatgt 662
           ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 292 tgagttccctttatatctttgtgtgtgcacagtatgtatgtaaatatgcatatagtatgt 233

                                      
Query: 663 gctcattcttgcatgtgattgcaagtg 689
           |||||||||||||||||||||||||||
Sbjct: 232 gctcattcttgcatgtgattgcaagtg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1092
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1082
Effective search space:   734678
Effective search space used:   734678
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)