BAC Information

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BAC

Clone NameMSMg01-331D24
Chromosome14 (Build37)
Map Location 52,658,002 - 52,658,661
singlet/doubletsinglet
Overlap genenone
Upstream geneRnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221
Downstream geneLOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331D24.T7 (MSMg01no331_d24.b1)MSMg01-331D24.TJ (MSMg01no331_d24.g1)
ACCAG447592AG447593
length733764
length of high quality
(start - end)		658 (76 - 733)201 (76 - 276)
definitionCHROMAT_FILE: MSMg01no331_d24.b1 PHD_FILE: MSMg01no331_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:07 2005CHROMAT_FILE: MSMg01no331_d24.g1 PHD_FILE: MSMg01no331_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAGAC
CGCGGAATTCCAGGCTGGTTCCAACTTACAGGAACTGCAGCAAAGTCCAC
ATTGGGTGACTAGGAGCAGAGTAGGTTTGCTTGACTTCCAGCTGGGCATC
TTCTTTCCTCAGAAACCTGTTTTAGTTCAAGTAACAGACCTGTAGCATTC
CTCTGATTAGAAAAATAGACAGAACCAGAAAACAAAACAAATCAAAACTA
GGAACGTGCCCAATGCCTGGGATAGTGCAGATAAAGAGGACCCTCCACTG
TGGCAGGTGTTCTCCTCCCCCTTCCCCTCTTTTTCTCCATCTCCTCTTTT
ATTGCGTACCACTTTTCTCCACTCTGCACTAAATTTAAAATCCTCCAGAA
TACAACGAATTAGGCAAAAAAAAAAAAAAAAAAAAAAAAACAGATTATAG
AGAGGTTGAAATCTGACATGTTTTTGAAATATCCTGTAGAAGACAGTTTG
CACCTAGGAAGAAGAAAACCGAAAGTGAATTTTATTTTTTAATGTTTATT
TTCATTTTATGTGCATTGATATATATATATTTGTGAGGGTGTTATTGGAT
CATCTGGAACTGGAGTTGCAGGCAGGTGTGAGCTGCCATGCAAGAGCTGG
GAATTGAACCTTGGTCCTTTGGAAGAGCAGCCAGTGCTCTTAATCACTGA
GTCATTTCTCCAGCCCCCAAGTTTTATTTTTTT

NCGATGATNTNGNNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGTCTTAAAGAGAGCCGTGTGTT
GACTGAACCGTAACTAGGAATTACGCGCAGTGGTTTAGGAAAGGATTCTC
TTANTATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGAGT
GCCACAGCACACGTGAANTTGACAGGACGGTATTGTAAGTCTGCTCTCCT
TCTACGTTCCTGTGGNTCACAGGNATCAAACTCTGNCTGCCAGGTTTACA
CAGCAAGCACCTTTATCTATTGATCTGTCTTGCCAACCACCCTCTCCTTA
CCACTTCTGTTTCCCTTGGTTTTACNTAACTCCCTCCAATTTGAATACCA
ATTTTTCTATGTATCATTTTTCTGGACTAACAACCTCCCCCCTATTCCTT
TTGTCCCTGGCCNCAAAAATTTCTTTGACCCCTTCCTTTTTTGCCACTCT
TTNTTTTAATTCTCAAAAACGGGNATTACCCCCCCCCCCTTTAAATTTCC
TGTCCCTTTTATGTTGTTGCTGGTANTTNCATGTTCTTATNCTGTNTTTT
TTTTNNTCNNTTTTTTCTCCCCCCCTTTTTCCCCTCTCTCTGTTCTGAAA
AAGGGGGGGCTGCTNACTACCCCATTTTTTTTTTTTTTGTTTNCCTGCNC
TCTTCNTCTCCTTTTTTCTCTTTCCTAACACACCCATCNAACAATAATTT
TATTAATGGTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_d24.b1 MSMg01no331_d24.b1 CHROMAT_FILE:
MSMg01no331_d24.b1 PHD_FILE: MSMg01no331_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:07 2005
         (658 letters)



>mm_chr14_52657804_52658861
          Length = 1058

 Score = 1265 bits (654), Expect = 0.0
 Identities = 658/660 (99%), Gaps = 2/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacaggaactgcagcaaagtccacattgggtgactaggagcagagtaggtttgcttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttacaggaactgcagcaaagtccacattgggtgactaggagcagagtaggtttgcttgac 258

                                                                       
Query: 61  ttccagctgggcatcttctttcctcagaaacctgttttagttcaagtaacagacctgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttccagctgggcatcttctttcctcagaaacctgttttagttcaagtaacagacctgtag 318

                                                                       
Query: 121 cattcctctgattagaaaaatagacagaaccagaaaacaaaacaaatcaaaactaggaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cattcctctgattagaaaaatagacagaaccagaaaacaaaacaaatcaaaactaggaac 378

                                                                       
Query: 181 gtgcccaatgcctgggatagtgcagataaagaggaccctccactgtggcaggtgttctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgcccaatgcctgggatagtgcagataaagaggaccctccactgtggcaggtgttctcc 438

                                                                       
Query: 241 tcccccttcccctctttttctccatctcctcttttattgcgtaccacttttctccactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcccccttcccctctttttctccatctcctcttttattgcgtaccacttttctccactct 498

                                                                       
Query: 301 gcactaaatttaaaatcctccagaatacaacgaattaggcaaaaaaaaaaaaaaaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcactaaatttaaaatcctccagaatacaacgaattaggcaaaaaaaaaaaaaaaaaaaa 558

                                                                       
Query: 361 aaaaa--cagattatagagaggttgaaatctgacatgtttttgaaatatcctgtagaaga 418
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaaaaaacagattatagagaggttgaaatctgacatgtttttgaaatatcctgtagaaga 618

                                                                       
Query: 419 cagtttgcacctaggaagaagaaaaccgaaagtgaattttattttttaatgtttattttc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagtttgcacctaggaagaagaaaaccgaaagtgaattttattttttaatgtttattttc 678

                                                                       
Query: 479 attttatgtgcattgatatatatatatttgtgagggtgttattggatcatctggaactgg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 attttatgtgcattgatatatatatatttgtgagggtgttattggatcatctggaactgg 738

                                                                       
Query: 539 agttgcaggcaggtgtgagctgccatgcaagagctgggaattgaaccttggtcctttgga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agttgcaggcaggtgtgagctgccatgcaagagctgggaattgaaccttggtcctttgga 798

                                                                       
Query: 599 agagcagccagtgctcttaatcactgagtcatttctccagcccccaagttttattttttt 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agagcagccagtgctcttaatcactgagtcatttctccagcccccaagttttattttttt 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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