BAC Information

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BAC

Clone NameMSMg01-331O07
Chromosome14 (Build37)
Map Location 111,927,527 - 111,927,709
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331O07.T7 (MSMg01no331_o07.b1)MSMg01-331O07.TJ (MSMg01no331_o07.g1)
ACCAG448073AG448074
length805728
length of high quality
(start - end)
263 (182 - 444)586 (69 - 654)
definitionCHROMAT_FILE: MSMg01no331_o07.b1 PHD_FILE: MSMg01no331_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:52 2005CHROMAT_FILE: MSMg01no331_o07.g1 PHD_FILE: MSMg01no331_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTCCTTCTCTTCTTTTCCTTACCTTCTTAGTTCACTATTATTCTTTTT
TTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGAGCCG
CGGAATTCACCTTGTTCCCCGAAATGCAATAAATACAACAAAATTTCATG
GAGCTAATTTTTAAAAGATGGAAGTCAGAGTGGTGTTTAATTTTTCCAAA
AGTGCACTATAAACCAATTCTAAAAGGCATTAAGTCATAGACTCCATCTG
TTAAAATGGAGATATATATATATATATTACTATTTCCATACATTCATGCT
ATCAATTTTTATGAAACCTTAATAAAGCTATAAAAGCTGCTTTTTCTTTT
GTTATAATATTATTTCGAATAGAAATGATCTGATAGCTAAAGGGCATTGT
TAACACTCAGTCTGCTTATTCCTGACTAACGAGAAACAGGCCTAACAGAA
CAGTTATATAACAGAAGCCACCCACCGATTCTCCTGGATTTATCTTTAAC
TATATTGTACCTCGCCAAGAAAAAAAATCAACGTAATCTGAAGAAAAAAA
TCATCATAATTTGAAAACTTCAATTGGCATGAGACTTTTTTCTTTTTTCA
TCTTTTTAGACATCTTCTCCACTTGCATTTCAAATACTATCCCAAAAAGT
TCCCTATATTCTTCCCCTCTGTTCAGCTTATCCAACCCACCCACTCTTGC
TTCCTGGACCCGTTATCTTCCTTGTTTGTCTACATTCATCCTTTCCCAAG
ATTACGGATTGCCTCCTTCTCTATGTATGTTTGACTATTCCCCTCCTTTT
GTATT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAGAAATATCTTTATTTTTCGCCTATTTCCTAGAATGTAAC
AGTGAATACTTACAGGCTAGAAACTTAACGCACGTATTGTATGAAGAAAT
ATCTTTGACTTCATTTTAGGTCAGAGAAAACACCTAAAAACTTTTTAAGG
GAAAGTATTTCTGTTGGGAAAATGGTGGCATATGTTTTATTCATGGCATA
TTCTTGGCAATACTCAGGGCTCCACACTAGAGAATTAGTATGATTATGAG
AATCTTGTGAAAATTTTCTTGCAATGTTCAAATCTTAAATAATGTCAACT
ATGTTGTGAGAAACTCTGACAATATGAAAATGGAGCAAGCATTTCTTCCT
TTCTTCCTTTCTTCCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTGATTGGG
TTTTCGAGACAGGGTTTCTCTGCATCCCACGGCTGTCCTGGAACTCACTG
TGTAGACCAGGCTGGCCTCAAACTCCGAAATCTGCCTGCCTCTGCCTCCC
GAGTGCTGGGATTAAAGACGTGTGCCACGACGCCCAGCTGTAGAAAGCTT
TTCATGACACCTTTTTATTTGTTCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_o07.b1 MSMg01no331_o07.b1 CHROMAT_FILE:
MSMg01no331_o07.b1 PHD_FILE: MSMg01no331_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:52 2005
         (263 letters)



>mm_chr14_111927247_111927909
          Length = 663

 Score =  300 bits (155), Expect = 6e-86
 Identities = 176/183 (96%)
 Strand = Plus / Minus

                                                                       
Query: 81  atatatatatatatattactatttccatacattcatgctatcaatttttatgaaacctta 140
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atatatatatatatataactatttccatacattcatgctatcaatttttatgaaacctta 404

                                                                       
Query: 141 ataaagctataaaagctgctttttcttttgttataatattatttcgaatagaaatgatct 200
           ||||||||||||||| || ||||||||||||| |||||||||||| ||||||||||| ||
Sbjct: 403 ataaagctataaaagttgttttttcttttgttttaatattatttcaaatagaaatgaact 344

                                                                       
Query: 201 gatagctaaagggcattgttaacactcagtctgcttattcctgactaacgagaaacaggc 260
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 343 gatagctaaagggcattgttaacactcagtctgcttattcctgactaatgagaaacaggc 284

              
Query: 261 cta 263
           |||
Sbjct: 283 cta 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)