BAC Information

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BAC

Clone NameMSMg01-332A18
Chromosome14 (Build37)
Map Location 45,511,301 - 45,511,850
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr
Downstream genePtger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332A18.T7 (MSMg01no332_a18.b1)MSMg01-332A18.TJ (MSMg01no332_a18.g1)
ACCAG448183AG448184
length1,3201,278
length of high quality
(start - end)		550 (144 - 693)676 (133 - 808)
definitionCHROMAT_FILE: MSMg01no332_a18.b1 PHD_FILE: MSMg01no332_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:06 2005CHROMAT_FILE: MSMg01no332_a18.g1 PHD_FILE: MSMg01no332_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GCCCCCCCCCNNNNNCCCGTCCACTTNNNNACATTGCGCGCTAAGACTCC
TAAGGGAGAGGATCCGCGGAATTCTGCATTGTCTCNAACCCTAACGCTGT
CCTGNNANCAGCTNAACAGAGGCTTGAAACCCTTACAACTTGTTAATCTT
GGGCTGAATCTCAGATGTTGCAAATGGTACTCTCAGTTGATCAGGCTACT
TCTAGACATCAGGGGGCAGAGTTTTCAAAGCCAGTACACAGCTGCCATCC
ATTCTTATAACACAGCTTAAAATAGTCTAAGAGGAAAGAAAGACCAACTA
TTAGATTACAACGGTAGAACACTATATACTGGGAGTGGCTATTACAACCT
TGGATGTGGTTCAAAGTCCACAGATGACATTTGCTTTTTGTCATTATCTC
TTCTTTGCAATAGTAAGCATACATACATCCTCATTCATCAGGATTGGAGG
CTGACCCTCCCTCAGAAACCTGCCTAAAGAGAGAGGAGTCAGCCTAGCTC
TGAATTATCTCTCAGCCCCATCTAACTCTACCCTACCAAGAGAGTTTCCC
ACCAAAGCCCAATAATACGAGAAATAATTTTAAGTCACTTGTTCAACTTA
TTGGTTGAGAAGCAAAAGCCCAATCAAAGGAGGCGCCTCCTATGTTCTGT
TACGAGACACAGCATCAGTGACACAAGTAGGGCTGAACTTGTGTCAGAGA
AAACCACGGAGATGGATTGTGAAATTTCTGTGCCCACCAACATCCTGGAG
GGAGTGGCATTGAGCTGGAGTCTCAGAGCAGCCTGCTTGGCTTCAAAGGG
GATGAAGAGAAGTTCGAGCTAAGCTGGTGTGACTTANGGAAGAACATGGT
GAAGAGATCGCCCTATTGAAGCCTCACAGCTGGATATTTGTGTGGCACTA
GGGAGCACATGGCATCATTTAACTTGTAAGAACTTTTGTCTGGGGAGATA
AAAAATCCCCCAAATAAGGCCGCGTTTCTAAGGTTCAGGAAAATCCACCC
CTCCCCATATTCCCAAAAAAGAAAGTCTGGTAGGTCGATCCCCTCTCCCG
CAAGCCCATGAAAGGCCCTAAAAGCTTCCCTATAAAGGTGGGCCTGTTCC
CCCCCCCCAGTGATTCTCAAACACCAAAAAAATAAGGTTGTTTTTGTTAT
AAAAAATCCTGACCCCAACTTTGAAAGGGAAATTTTCCCGGGGAAAGGGA
GAAAACAAAACCTAGGCTTCCCTTTAAGGAGAAAAACCTTAGCCCCCCCC
TGTCCCAAAAAGGTGGGAACACCCTAAACAAAAATCCAGGCAAGTTTCCC
GGAGTTTTAAAATAGGAAAA

CCGGGTCTTTNNTNAAAGCATGGAGNCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTATAAGACCCTGAGTAATTGT
TCTGTAATCTGAAGAGCCCCTTTACCTTCTTCAGAGAAGAAAGGTAACAG
AAGTAATTGAAGCACTTGGGTATTTGAAATCTATACTCAATTAGGTTAGG
GAGGGGAGCTGGCAAACTGATGGGATAACAATCAATAAAGCTAGGGTCAG
GAGGCCATTCTGGTGTGAATTTATATTTCTGAGTGACTTTTCTCCTCTTA
ACAGAATACTGGCTGACACTTGCCTAAATATTTCCACCAACTGACATTTC
TCAACCACAGGGCATTTAAGCTGATTTCTCTGCAGAGTTGGATTTGAATT
GGAGAGCATGCTCCTTTGTACCTGCTGCCCCTGGCAGCCGTGGTTCTAAT
AATGTGAGTGGGAGGTCACTTTCTTAGCCTGACAGCAAAATGAAGATCTT
TGAGCTCTGGAGATATAAAAACTTATGGACCTTTAAATGACCTGAAAGAG
CAGAATGGTAGCAATGGTAACCTAGGATGGTGTTTGCAGAGGTGCCTGTT
ATGAAGGTAAGCTTTCCAACTAGCTATTTACTGATGAATGGGCTTTAACA
TATCTTAAATCTGAAGATTTTTAGACAAGGTAAGGCAATATTTTTTACAT
GAAGCATCCGTTCTGATGTTAAATGTCATGTAATTCATTTTGGAAGATTT
AACAAGTAAGCTGTGTTTATTGTAGTCAGCACAGTAATCAGTAGTAAATG
AAGTGTACTGGTTCATGTTTTTATAAATGATTTTAACAGCGTGAGGAGCC
GAGCACATACATAGATATTTATCTGAAAAATAGAAAGTGGTTGCTCCGGT
TTCTTCATTCCTACACTGTAATACATAAACCCAGAGTTATTTTGACAACA
AGCCCCCCCCCAAAAAATAAAACTTTCTACTGCACATCCTTCGCACCTGT
CTAAACAGCAAAACTAACCGAATTTTGACCGTGGGTCCCCAATCTTAAAT
CAACCTGCTTGCAAGGCTTTTAAAGGAAATTCGCTAGGAGCCCTAGGGAA
TCCCAGTGGGGGCCTCTTTAAGGAAGCCTTTTTAAAAGATATCCAAGTTA
AAAGGGAAGGGGCTTTAAAAAGGAAAAATTTGGTTTCCCCCGGAAAAAAA
ACCACACCCTTTTCTCTCTAGGGAAAAAAAGAATACAGGGACTTTCCTAT
TTTAAAAAACATATTTGCTCTGTGGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_a18.b1 MSMg01no332_a18.b1 CHROMAT_FILE:
MSMg01no332_a18.b1 PHD_FILE: MSMg01no332_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:06 2005
         (550 letters)



>mm_chr14_45511101_45512050
          Length = 950

 Score = 1033 bits (534), Expect = 0.0
 Identities = 546/550 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatcttgggctgaatctcagatgttgcaaatggtactctcagttgatcaggctacttct 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 taatcttgtgctgaatctcagatgttgcaaatggtactctcagttgatcaggctacttct 691

                                                                       
Query: 61  agacatcagggggcagagttttcaaagccagtacacagctgccatccattcttataacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agacatcagggggcagagttttcaaagccagtacacagctgccatccattcttataacac 631

                                                                       
Query: 121 agcttaaaatagtctaagaggaaagaaagaccaactattagattacaacggtagaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agcttaaaatagtctaagaggaaagaaagaccaactattagattacaacggtagaacact 571

                                                                       
Query: 181 atatactgggagtggctattacaaccttggatgtggttcaaagtccacagatgacatttg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 570 atatactgggagtggctattacaaccttggatgtggttcaaagttcacagatgacatttg 511

                                                                       
Query: 241 ctttttgtcattatctcttctttgcaatagtaagcatacatacatcctcattcatcagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctttttgtcattatctcttctttgcaatagtaagcatacatacatcctcattcatcagga 451

                                                                       
Query: 301 ttggaggctgaccctccctcagaaacctgcctaaagagagaggagtcagcctagctctga 360
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 450 tgggaggctgaccctccctcagacacctgcctaaagagagaggagtcagcctagctctga 391

                                                                       
Query: 361 attatctctcagccccatctaactctaccctaccaagagagtttcccaccaaagcccaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 attatctctcagccccatctaactctaccctaccaagagagtttcccaccaaagcccaat 331

                                                                       
Query: 421 aatacgagaaataattttaagtcacttgttcaacttattggttgagaagcaaaagcccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aatacgagaaataattttaagtcacttgttcaacttattggttgagaagcaaaagcccaa 271

                                                                       
Query: 481 tcaaaggaggcgcctcctatgttctgttacgagacacagcatcagtgacacaagtagggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcaaaggaggcgcctcctatgttctgttacgagacacagcatcagtgacacaagtagggc 211

                     
Query: 541 tgaacttgtg 550
           ||||||||||
Sbjct: 210 tgaacttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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