BAC Information

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BAC

Clone NameMSMg01-332C05
Chromosome14 (Build37)
Map Location 90,855,698 - 90,856,213
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336, EG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332C05.T7 (MSMg01no332_c05.b1)MSMg01-332C05.TJ (MSMg01no332_c05.g1)
ACCAG448249AG448250
length1,2221,297
length of high quality
(start - end)
586 (129 - 714)771 (91 - 861)
definitionCHROMAT_FILE: MSMg01no332_c05.b1 PHD_FILE: MSMg01no332_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:16 2005CHROMAT_FILE: MSMg01no332_c05.g1 PHD_FILE: MSMg01no332_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCCCATTATTNNNNNCCATTGGCGCTAAGACTACTAAGGGAGAGGA
TCCGCGGAATTCTGCTATTTAATCTTTACTCACACTAAATAAGTTGACCC
TAACTGGCATGAATATACCCCTTATAACAGAAGAACTGTACAGAAAAACA
CTATTTTCTCATTTCCTGTGATGAGACATCTGTGTCAACTAAACTAGAAA
TCAAAGCAGCTTTATTTGCTAAGAAAATATACCGAACACTCTGCACTAAT
GTACTGTCATCTTCATTTCCAGAATTCAGTATCATTATGACATAAGCTGA
ATATAAAATTCTGTACTTTTTTGCCTTTTTCATGCAAATATGTCAATGAA
TTCTTTTAAGAATCCATTCTTATATATTGATGCCTAAGAATTCCCTAAAA
CATGTTTTGTTTTTGTTTTTGTTTTTGTTTTTAAAAACAATTACTTCTAA
AGATTTTCTAGGCTAGTTTGACCACATAGATGGCTCTTGGTAACCTTATT
CTGTTCCTCAAGAAATCGCAGAAACATGTTACTAGGTTAGACATGTGATT
TGCCTCTGAGTTTTGATTAATTTATTTCTTTCACCAGCAATTTTTTTGTT
TGTTTGCTAAGATGACTAGAATGCCCAATGCAGCAGATCAGAAAAGAAGA
AATGGATACAATTAGCATGAAAAATTTTGGTAATATAAAAAATGTATATA
TATATATATAATGTTGAATAGCATTTTCTTTTTTTTTAAATATTTTTTTT
GCTTTTTTGTTTATATATATTTAGGGATTTTCCTCATCTACATTTTCAAT
GAAATCCCCAAAGGTGACCCATACCCCACCCCCCCCATGGCATAACCACC
CACTCACCCTTTTTGGTTCTGGGGGTCCCCTGTACTGGGGGCATAAAGAT
TTGAAGACCAAGGGGCCTCTCTTTAATTGATGGGCGACAAGGCCACCTTT
GATATATATGCGCTTGAAAAAAAAATCCGGGGGACCGGGAAGTCCAATGT
GGTTCCCCTTTTTTTTTCTATTAAGAGGGTTTGGTTTGCGAAAATTTCAT
TTTTTAGGCCCATTTATCATTTGATTTACAAAAACCATGCGGTCATTTCG
AATTTTCCCGGCCCAACTTAGGGTCCCAAATCCCTAAAATAAGGGCTGGG
TTAGGGTCCTACCCTAATGCCTTAAGGAAAAAAGAATACATTTTTAAAAG
CTGGGCCCCTGAAAGTTTTCTG
NCCAATCCATTTTNNNTAGCAGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATTGCGCGTACAAGGCT
TGTTTACTAGTTAGGCACCCCTTAGGCCCGCGCCATCTTATAATGGCAAT
TGCTCGCAGCACGTACCGGCTTTCCACAATATGGATCTAAAGTCACTGCT
CATGATGATGATGATGGAGGACTATAAGTTATAAAAATAACCCCCTTAAA
GAAATACAGGAGAATACATACAAACAGGTGAAAGAATTGAACAAAACCAT
CCAGGATCTAAAAATGGAAATAGAAATAATAAAGAAAACCCAAAGGAAGA
CAACTCTGGAAATAGAAAAGCTAAGAAAAATGTCAGGAGCCATAGATGCA
AGCATAACAAACAAATTTCAAGAGATGAAAAGAGAATCTCAGGTGCAGAA
GATAACATAGAAAATATTGACATAACAATCAAAGAAAATGCAAAATGCAA
AAAGATCCTAACTCAAAACATACAGGAAATCCAGGACAAAATGAGAAAAC
CAAACCTACGGATAATAGGAGTAGATGAGAATGAAGATTTTCAACTTAAA
GGGCCAGCAAATACCTTCAACAAAATTATAGAAGAAAACTTCCCAAACCT
AAAGAAAGGCATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAACA
GACTGTACCAGAAAAGAAATTCCTCCGTCACATAATAATCAAAATACCAA
ACACACAAAACAAATAAAGAATATTAAAAGCAGTAAGGGAAAAAGGTAAT
TTAACATATAAAGGCAGACCTATCCGAATTTCACCTGACATCTCCCCCAG
AGACTATGAAAGCCAGAAGATCTTAGAGATACAGACTCTAAGAGAATGAA
AATGCCAGCCCAGGCTAATATACCCAGAAATATTCTCAATTACCATAGAC
AGAAAAAACCCATGAAAGTTATTCCATGAGAAAAACAAAATTACACAAAA
TCTTTCCACAAATCCAGCCTTTTCAAGGATTACAAAGAAAAAACTTCCAC
ACCAGGAAGGAAACTACCTTCTAAAAAAGCAAAACGTGTTTCTTTCACAA
ACCTAAAAGAAATAGCCCCTGGAACAAAATTCCCACTCTTAACACAAAAT
ATCTGGAAGGACCAACAACTTTTCCCTACACCCCATAAGAAAAAAGGGAC
CCTCTCCCCTTTAAAAATCCTTAATATGACCTAACCACCGGGTTATAAAA
AGAACCCCCTTTTTTTTGTTCTGGAAATCCCCCTCTGACAAAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_c05.b1 MSMg01no332_c05.b1 CHROMAT_FILE:
MSMg01no332_c05.b1 PHD_FILE: MSMg01no332_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:16 2005
         (586 letters)



>mm_chr14_90855228_90856213
          Length = 986

 Score =  998 bits (516), Expect = 0.0
 Identities = 516/516 (100%)
 Strand = Plus / Minus

                                                                       
Query: 71  aatcaaagcagctttatttgctaagaaaatataccgaacactctgcactaatgtactgtc 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 aatcaaagcagctttatttgctaagaaaatataccgaacactctgcactaatgtactgtc 927

                                                                       
Query: 131 atcttcatttccagaattcagtatcattatgacataagctgaatataaaattctgtactt 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 atcttcatttccagaattcagtatcattatgacataagctgaatataaaattctgtactt 867

                                                                       
Query: 191 ttttgcctttttcatgcaaatatgtcaatgaattcttttaagaatccattcttatatatt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ttttgcctttttcatgcaaatatgtcaatgaattcttttaagaatccattcttatatatt 807

                                                                       
Query: 251 gatgcctaagaattccctaaaacatgttttgtttttgtttttgtttttgtttttaaaaac 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gatgcctaagaattccctaaaacatgttttgtttttgtttttgtttttgtttttaaaaac 747

                                                                       
Query: 311 aattacttctaaagattttctaggctagtttgaccacatagatggctcttggtaacctta 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aattacttctaaagattttctaggctagtttgaccacatagatggctcttggtaacctta 687

                                                                       
Query: 371 ttctgttcctcaagaaatcgcagaaacatgttactaggttagacatgtgatttgcctctg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttctgttcctcaagaaatcgcagaaacatgttactaggttagacatgtgatttgcctctg 627

                                                                       
Query: 431 agttttgattaatttatttctttcaccagcaatttttttgtttgtttgctaagatgacta 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agttttgattaatttatttctttcaccagcaatttttttgtttgtttgctaagatgacta 567

                                                                       
Query: 491 gaatgcccaatgcagcagatcagaaaagaagaaatggatacaattagcatgaaaaatttt 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaatgcccaatgcagcagatcagaaaagaagaaatggatacaattagcatgaaaaatttt 507

                                               
Query: 551 ggtaatataaaaaatgtatatatatatatataatgt 586
           ||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggtaatataaaaaatgtatatatatatatataatgt 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)