BAC Information

Click to search

BAC

Clone NameMSMg01-332D05
Chromosome14 (Build37)
Map Location 77,890,250 - 77,890,934
singlet/doubletsinglet
Overlap geneD230005D02Rik, EG629678
Upstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, LOC100043755, LOC676171
Downstream geneGm1587, Dnajc15, Epsti1, AU021034, Tnfsf11, LOC219180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332D05.T7 (MSMg01no332_d05.b1)MSMg01-332D05.TJ (MSMg01no332_d05.g1)
ACCAG448294AG448295
length1,3531,306
length of high quality
(start - end)
595 (132 - 726)685 (133 - 817)
definitionCHROMAT_FILE: MSMg01no332_d05.b1 PHD_FILE: MSMg01no332_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:24 2005CHROMAT_FILE: MSMg01no332_d05.g1 PHD_FILE: MSMg01no332_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCCAACCTTNGNGNNAATTCGGCCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCAGTCTCCTCTTGGCTCCTACCTAACCCCTTNNNNNTTNNG
NNGNCTGNNGGATAACATTTAAAACTCTCAGCTCTTTCTCCAGNACATGT
CCACCTGCACACCGCCATGCTTCCTGCCATGACAATGATGGACTAAACCT
CTGAAACAATAAGCCAGCTCCAATTAAATGTTTGCCTTTATAAAAGTTGC
CTTGGTCATGGTCACTTATTCACAGCAGTAAAACCCTAACTAAGACAACT
ATTAAAACACCAACAATAACAATCATAGATAAAAGCACACTGTATCCCAA
AGATCCAAAGCAATTTTGAGCAAAAGGAACAATGGGAGAGGCTACACTTG
GTTTCAAATTCTCCAGCTGAGCCATAGCAAGCTACTGACACTAAAACAGA
CAAAGATCAATAAAACTGAATTGATGGCCTAGAACCAAACTCCCATCTAC
TTCTTGACAAAAGTGTCAAAAACATACATTGGAGAGAAGACAGCCCCTTC
TCCAGATAGTGCTGGGAAAACTGAATATTGTCTTACTTAGGGTTTCATTG
CAGCAAAGAGACACCATGACCAATGCAACTCTTACAAAGGCAAACATTTA
ACTGGAGCTGGCCTACAGTTTCACAGGTTCAGTCCATTATCATCACAGTG
GGAAGCAGGGCAGTGGTGCTGAAGGAGTCAAGAGTTCTACATCCTGATTC
AAAAGCAGATAGGAGGAGACTCTCTTCCATAGGCAGTGGAAAGGAGTGTC
TCATCCCAACTGTGCATAGGAAGTCAAGGCCCACCTATACAATGATATAC
TTCTTTCTAAAAACCCACACTCCTAATAGTGCCACTTCCTATGGCTAAAC
ATGAATCTCTGGGGGGCTAATATATTCTAACCACCCCCCAAATTTTCTTT
GATAAAATCAAACTAAAAGTCCTTCTTTTCTCCTTACCAAAATTCAATCT
GAAATGTATTAAAAACCCTGTTGTATCCCTGAAAACCTGAAATTTTTAAA
GGAAAAAAAAGAAAAAAAAACCCTTTTAAATACGGGTAAAGAATTTCTGA
AAGGGGTCTTTCCTCTAGGGCCCTTTATAAAAAAAAACACGAGGAAATGG
GAATTACAAGTTTTTGCCGCCCCGGGGAATTTACAGATTAAGAAAAAACA
AATTTAATGTGGGACCTTTCTAAATTTAAAACCCCGGGGAAAACGGAATA
AATCCAATGAATTGGAAAATATAAAAAAAGCAAAAGGCTATCTTCCCGGA
AGAACTTTATTTATGTCTGAAAAAACACTAAACTCTCTGGGTATATAATT
ATA
CGCTCTTTTNNAAACGCATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGACCCTGCCTGTTTCTGTA
GGTCTTGTTTATGGCTTTTGATGACCCGGACAATAAATTCCAGGACTCAC
AGCTCTCGCTGCCAGTGTAATTAGATTGCTTGTGCTAGAGACACTGTATT
GAGTACAAGAGAGAGAGAATGGATTGAAAGGGAAAGGTCTGTGATGGTCT
GACTTTACTTCCCAGCCCAGGAGAATAGTCCCAGGCAATCCCAGATGACC
ACAGATTTACTCCCCGTCTCTCCATCTCCTCGTCTCTCTATATACATAGA
TGTTATGCATTTTACACACCAACCTATCTACCCAGCCTTTCTGAGGTACC
CAGGCTCTCTTGAATGAAGGTGTATCATCAGCTCTGCTGTCAGCGGACTG
CCCTCACACAACACTCGCTGCTTCGAACACTCCGTAGACACATTGCCGAA
ACTGTACGATCATATTTCTTGCTTCACAGTACAACTCTGGCTCTAGAAGG
CACTAGCTCAGCCACAACTGTTTCAAAACAAACATGTACTGGACTTTTGG
CCATCATCAGCCTTGATGAACTCTAGATGACCCTAAAGCCCTTTCCATAC
TGGACAGAGTGGAAGACTTCCTTAGGTGGCCCAGGAGAAGGGCCATGGCT
GGTACCAGTACAGACTTTCACTTTCCAGAAAGACAGCCATGATTGACAGA
AGCATCCGTGCTACATCCCCTAGCTTGGCCACATATGTAGGCTGTTCAGC
CTGCATTTTGAGCCAGCTAAGAGACCACTTCTTGTTGTTCCCTTGTAGAC
CTAATAACTGGCAGGCCTTACTGACTTTTGGACTTTTAGTACCATGAGCT
TGAGCTTGTCATACAAAAAGATGCTTAAAACAGCCATAGAGTGGCTACCG
TAACCAAATTATCAAAGGCCCCTCCCCAAAAAACATCCGTGTAGAACGTA
ACAGGAGTGGTACCAAGCCTATGCTCTGCAATGTCTTTGATGGGCCTGGG
CCAAAAAATGACCAAAAACCAAGCCTGAAAAAACAAACAACCTTAACTGA
AAAAAGTAAAATTAAGGTTTGCCTGGAATTGTTTCTTAAAACTTGGGGTG
TTTAAAAGACCCCCGCCTCTACGCCTCCCCAAATTTAAAACCTGGTAAAC
GCGCGATTGGCGCTCCACACCACAAGTCTTGTTTCCAAAACAAAAAATTT
TCTTCTTTGTTGAGCGTGTTTCACAAATACCGTGCGTATCTACACACAAA
AATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_d05.g1 MSMg01no332_d05.g1 CHROMAT_FILE:
MSMg01no332_d05.g1 PHD_FILE: MSMg01no332_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:24 2005
         (685 letters)



>mm_chr14_77890050_77891134
          Length = 1085

 Score = 1294 bits (669), Expect = 0.0
 Identities = 681/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaattccaggactcacagctctcgctgccagtgtaattagattgcttgtgctagagac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ataaattccaggactcacagctctcgctgccagtgtaatgagattgcttgtgctagagac 260

                                                                       
Query: 61  actgtattgagtacaagagagagagaatggattgaaagggaaaggtctgtgatggtctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtattgagtacaagagagagagaatggattgaaagggaaaggtctgtgatggtctga 320

                                                                       
Query: 121 ctttacttcccagcccaggagaatagtcccaggcaatcccagatgaccacagatttactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttacttcccagcccaggagaatagtcccaggcaatcccagatgaccacagatttactc 380

                                                                       
Query: 181 cccgtctctccatctcctcgtctctctatatacatagatgttatgcattttacacaccaa 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatctctccatctcctcgtctctctatatacatagatgttatgcattttacacaccaa 440

                                                                       
Query: 241 cctatctacccagcctttctgaggtacccaggctctcttgaatgaaggtgtatcatcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctatctacccagcctttctgaggtacccaggctctcttgaatgaaggtgtatcatcagc 500

                                                                       
Query: 301 tctgctgtcagcggactgccctcacacaacactcgctgcttcgaacactccgtagacaca 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 tctgctgtcagcggactgccctcacacaacacttgctgcttcgaacactccgtagacaca 560

                                                                       
Query: 361 ttgccgaaactgtacgatcatatttcttgcttcacagtacaactctggctctagaaggca 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgccgaaactttacgatcatatttcttgcttcacagtacaactctggctctagaaggca 620

                                                                       
Query: 421 ctagctcagccacaactgtttcaaaacaaacatgtactggacttttggccatcatcagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagctcagccacaactgtttcaaaacaaacatgtactggacttttggccatcatcagcc 680

                                                                       
Query: 481 ttgatgaactctagatgaccctaaagccctttccatactggacagagtggaagacttcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgatgaactctagatgaccctaaagccctttccatactggacagagtggaagacttcct 740

                                                                       
Query: 541 taggtggcccaggagaagggccatggctggtaccagtacagactttcactttccagaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taggtggcccaggagaagggccatggctggtaccagtacagactttcactttccagaaag 800

                                                                       
Query: 601 acagccatgattgacagaagcatccgtgctacatcccctagcttggccacatatgtaggc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acagccatgattgacagaagcatccgtgctacatcccctagcttggccacatatgtaggc 860

                                    
Query: 661 tgttcagcctgcattttgagccagc 685
           |||||||||||||||||||||||||
Sbjct: 861 tgttcagcctgcattttgagccagc 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)