Query= MSMg01no332_m05.b1 MSMg01no332_m05.b1 CHROMAT_FILE:
MSMg01no332_m05.b1 PHD_FILE: MSMg01no332_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:34 2005
(533 letters)
>mm_chr14_57936678_57937609
Length = 932
Score = 961 bits (497), Expect = 0.0
Identities = 521/529 (98%), Gaps = 3/529 (0%)
Strand = Plus / Minus
Query: 3 tttttctttttcttttttgttgttgaaagtttaaccaacttgtaaccaagtatagtgact 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tttttctttttcttttttgttgttgaaagtttaaccaacttgtaaccaagtatagtgact 670
Query: 63 cacacatgtactcctaacatttgggaggtggacaggggagacagagggtaaagtcaaggc 122
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 669 cacacatgtactcctaacatttgggaggtggaca-gggagacagagggtaaagtcaaggc 611
Query: 123 tagcctgagccacatgagatcctgtctaaacaaacacacagacccataaacgcaaaccaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tagcctgagccacatgagatcctgtctaaacaaacacacagacccataaacgcaaaccaa 551
Query: 183 aaaacaccctacaagaacaaagaaacctcagtgacttgtatttaagaatgtcacttccct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aaaacaccctacaagaacaaagaaacctcagtgacttgtatttaagaatgtcacttccct 491
Query: 243 tgaagctccat-catacaatggcttagcacatggcacttagactgatttcacctcttcct 301
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 490 tgaagctccatccatacaatggcttagcacatggcacttagactgacatcacctcttcct 431
Query: 302 cccaggaaagactagaaataccctagagcgatgacatagggatgtaagtgaactgttttt 361
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cctaggaaagactagaaataccctagagcgatgacatagggatgtaagtgaactgttttt 371
Query: 362 attctattattttttttcatgtcaagcatttaaattctaaataaatgatctcataaaagg 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 attctatta-tttttttcatgtcaagcatttaaattctaaataaatgatctcataaaagg 312
Query: 422 tacagaagtatccctggaatgaggatgggagaaggtactcagagggatggcgctgaacca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tacagaagtatccctggaatgaggatgggagaaggtactcagagggatggcgctgaacca 252
Query: 482 cgtttgtttctgaggtgctgtgaggtcaccggaggcaggactgcgtttt 530
| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 251 catttgtttctgaggtgctgtgaggtcaccggaggcaggactgcatttt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space: 482206
Effective search space used: 482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_m05.g1 MSMg01no332_m05.g1 CHROMAT_FILE:
MSMg01no332_m05.g1 PHD_FILE: MSMg01no332_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:34 2005
(762 letters)
>mm_chr14_57786887_57788048
Length = 1162
Score = 1406 bits (727), Expect = 0.0
Identities = 754/763 (98%), Gaps = 1/763 (0%)
Strand = Plus / Plus
Query: 1 tggctttgcagtaaatgggatgcaaaaaaggcgttggcggtggcgggaccaaggctcttc 60
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 201 tggctttgcagtaaatgggatgcaaaaaaggtggtggcggtggcgggaccaaggctcttc 260
Query: 61 tgccttggtggacagtggggaggtccaagcccagcaaggtgctcataaagatgctgttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccttggtggacagtggggaggtccaagcccagcaaggtgctcataaagatgctgttct 320
Query: 121 ctcatgacccctgccctgctccgatcatttagcgctgtctagctagagctcatgtcagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcatgacccctgccctgctccgatcatttagcgctgtctagctagagctcatgtcagct 380
Query: 181 taaaaacagaatagaggagaaacaagagacacctcgggatggcagtgctaagctcacacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaacagaatagaggagaaacaagagacacctcgggatggcagtgctaagctcacacc 440
Query: 241 aggggtgcctcccaagctcaccagaagggactctagcctaggcagtaactgcacctggaa 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aggggtgcctcccaagctcaccagaagggactctagcttaggcagtaactgcacctggaa 500
Query: 301 caaaaccttactttagagaaagcatattccattttactgtgatcctcaggtgtaatggct 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaaccttactttagagaaagcagattccattttactgtgatcctcaggtgtaatggct 560
Query: 361 tgcttttaagggcatctgctaattgcctaccacctctgtcttccttggtgctaggcttcc 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttttaagggcatctgctaattgcccaccacctctgtcttccttggtgctaggcttcc 620
Query: 421 atgaaatgtccacataggctcatgtgtttggacacttagtctttagatgctgacagcatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 atgaaatgtccacataggctcatgtgtttggacacttagtctttagatgctgacaacatg 680
Query: 481 tggg-agattatggaatccagggagatgtggcctagttggctgacttaaggccactgtag 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggggagattatggaatccagggagatgtggcctagttggctgacttaaggccactgtag 740
Query: 540 gcaggctttgggtgttacagggtaccagtcagcttcatggtcagtgctgtgtaaccagct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcaggctttgggtgttacagggtaccagtcagcttcatggtcagtgctgtgtaaccagct 800
Query: 600 gctgttgcttgatcccatcatgtgcagaaccacccgcagccatgcgttccctactatgct 659
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 801 gctgttccttgatcccatcatgtgcagaaccacccgcagccatgcgttccctactacgct 860
Query: 660 gaactgaaggtcccttgaaagcctgagaagaagtaaactcttctcctcttatgtgcttct 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaactgaaggtcccttgaaagcctgagaagaagtaaactcttctcctcttatgtgcttct 920
Query: 720 gccaagtatttggtcacagcaatgaggagaccttggtattagc 762
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gccaagtatttggtcacagcaatgaggagaccttggtattagc 963
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1162
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1152
Effective search space: 866304
Effective search space used: 866304
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
