Query= MSMg01no333_m20.b1 MSMg01no333_m20.b1 CHROMAT_FILE:
MSMg01no333_m20.b1 PHD_FILE: MSMg01no333_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:03 2005
(589 letters)
>mm_chr14_76212441_76213429
Length = 989
Score = 1060 bits (548), Expect = 0.0
Identities = 579/592 (97%), Gaps = 6/592 (1%)
Strand = Plus / Plus
Query: 1 gcatctcacaactatctgtaattctaagatctaacaccctcacactaacatacgtgcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatctcacaactatctgtaattctaagatctaacaccctcacactaacatacgtgcagg 260
Query: 61 taaaacaccaatgcacattaagtaataaagataaatacattttttttaaaaatcagagta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 261 taaaacaccaatgcacattaagtaataaagataaatacattttttttaaaaaacagaata 320
Query: 121 ataataatgttatccaactgaacagtagggcatcttctgaccatcatccttggcctatgt 180
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatagtattatccaactgaacagtagggcatcttctgaccatcatccttggcctatgt 380
Query: 181 ggagctgtttccatcccctgaccaccctactcattgtatccttactttaactgctgacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagctgtttccatcccctgaccaccctactcattgtatccttactttaactgctgacct 440
Query: 241 catttccaacctactgtttctcctctccactgggccattcatggggtccaagtcaacccc 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 catttccaacctactgtttctcctttccactgggccattcatggggtccaagtcaacccc 500
Query: 301 ggcctctttggtgttatctcatgatttcatctccatcactgacccgc---cctatcttcc 357
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 501 ggcctctttggtgttatctcatgatttcatctccatcactga---gtgttcctatcttcc 557
Query: 358 tgctctatatcagacccttcaacatgtcccttgtggtgctttgaatgtgcttggctcggg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 558 tgctctatatcagacccttcaacatgtcccttgtggtgctttgaatgtgcttggctcagg 617
Query: 418 gagaggccctgttaggaggtggtgtggccttgttggatagaggaagtgtgtcactgtgag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gagaggccctgttaggaggtggtgtggccttgttggatagaggaagtgtgtcactgtgag 677
Query: 478 ggtgggcaatgagacccttctcctaaccacatggaaaacagtcttctcctatttgcctgc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ggtgggcaatgagacccttctcctaaccacatggaaaacagtcttctcctatttgcctgc 737
Query: 538 aatacaagacgtttaactcttaactcctccagtgccatgtctgcctgcctgg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aatacaagacgtttaactcttaactcctccagtgccatgtctgcctgcctgg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_m20.g1 MSMg01no333_m20.g1 CHROMAT_FILE:
MSMg01no333_m20.g1 PHD_FILE: MSMg01no333_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:04 2005
(566 letters)
>mm_chr14_76369852_76370818
Length = 967
Score = 882 bits (456), Expect = 0.0
Identities = 474/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 1 atatgcttttcccagaagagcgatcttttacaatgtaaaagtactgccatgtaccacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atatgcttttcccagaagagcgatcttttacaatgtaaaagtactgccatgtaccacata 421
Query: 61 ctgtcatgaaacgtaaaacaaccagtcatgacctttgtgcaggagagagtggggtggtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctgtcatgaaacgtaaaacaaccagtcatgacctttgtgcaggagagagtggggtggtaa 361
Query: 121 tggttgtgttgttagaataccaatactttctgagggaatttagctttttatattaaatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tggttgtgttgttagaataccaatactttctgagggaatttagctttttatattaaatac 301
Query: 181 aacttttaaaaataaagtgaattaaaagtaattgtgcttacatttttaaaattacat-ct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 300 aacttttaaaaataaagtgaattaaaagtaattgtgcttacatttttaaaattacatcct 241
Query: 240 gtggttaaagggccagccttggagtgataccaattagttggtgttggtggtatagtgatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtggttaaagggccagccttggagtgataccaattagttggtgttggtggtatagtgatg 181
Query: 300 aacatacttgcctttcataaacattaggaatggctttattacacacccaccctttgagtt 359
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 180 aacatacttgcctttcataaacattaggaatggctttattacataaatagcctttgagtt 121
Query: 360 cactaactatctcattgtctactgccaaagttgtatatagcacagtttgctatttccaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 cactaactatctcattgtctactgccaaagttgtatatagcacagtttgctatttccaca 61
Query: 420 tacattgttagtgacctttcatttctcatctatacactaatgcttttgctctgcaagaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 tacattgttagtgacctttcatttctcatctatacactaatgcttttgctctgcaagaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
