Query= MSMg01no333_p14.b1 MSMg01no333_p14.b1 CHROMAT_FILE:
MSMg01no333_p14.b1 PHD_FILE: MSMg01no333_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:15 2005
(653 letters)
>mm_chr14_83224774_83225827
Length = 1054
Score = 1116 bits (577), Expect = 0.0
Identities = 595/601 (99%), Gaps = 2/601 (0%)
Strand = Plus / Minus
Query: 1 ctccctttgcccagccattggtttctgttatctttattggtaaataaaaaaacaaaaaca 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 804 ctccctttgcccagccattggtttctgttatctttattggtcgataaaaaaacaaaaaca 745
Query: 61 aaaacaaaaaacaaaaaacaaacaaacaaacaaacaaaaaacagggacaagaaacttaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaacaaaaaacaaaaaacaaacaaacaaacaaacaaaaaacagggacaagaaacttaag 685
Query: 121 cctttggacacagattcctgactaaatcaaagaattagatccaatccccaatagtagcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cctttggacacagattcctgactaaatcaaagaattagatccaatccccaatagtagcgt 625
Query: 181 atgtgtttctcataaaattatctaataatgcttga-aatatattgccttttaaatttgtt 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 atgtgtttctcataaaattatctaataatgcttgagaatatattgccttttaaatttgtt 565
Query: 240 ttccagtgtatttgaaaatgaatatatataaaattctgttaaggtattctgtaacttaat 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 ttccagtgtatttgaaaatgaatatatctaaaattctgttaaggtattctgtaacttaat 505
Query: 300 tttagacattatgtgttcattactacagcctatgaaggtaatacaagcaggcaaaaatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 tttagacattatgtgttcattactacagcctatgaaggtaatacaagcaggtaaaaatat 445
Query: 360 atcaaaaattctttaaatttaccatccagaacaactaattgtcaatttaaaaactgaaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atcaaaaattctttaaatttaccatccagaacaactaattgtcaatttaaaaactgaaat 385
Query: 420 agcaagaatgagcggcacacgcctttaatcccagcactcgggaggcagagactggcggat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcaagaatgagcggcacacgcctttaatcccagcactcgggaggcagagactggcggat 325
Query: 480 ttctgagttccaggccagcctggtctgcaaagtgagttccaggacagccagggctataca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctgagttccaggccagcctggtctgcaaagtgagttccaggacagccagggctataca 265
Query: 540 gtgaaaccctgtctcgaaaaacaaa-caaaacaaaacaaaacaaaacaaaacaaaacaaa 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgaaaccctgtctcgaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaa 205
Query: 599 a 599
|
Sbjct: 204 a 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 15
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_p14.g1 MSMg01no333_p14.g1 CHROMAT_FILE:
MSMg01no333_p14.g1 PHD_FILE: MSMg01no333_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:16 2005
(637 letters)
>mm_chr14_83116733_83117768
Length = 1036
Score = 905 bits (468), Expect = 0.0
Identities = 580/640 (90%), Gaps = 41/640 (6%)
Strand = Plus / Plus
Query: 1 tttgtataaaatttaacgcttttttgtattttttatttagttgttaaattttttttta-a 59
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct: 206 tttgtataaaatttaacgcttttttgtatttgttatttagttgttaa-tttttttttaca 264
Query: 60 atcgaggctttatctccctccctgtccaccctccaactgttccgcatcccacacctcctc 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgaggctttatctccctccctgtccaccctccaactgttccgcatcccacacctcctc 324
Query: 120 cctcatctcaaagaggatgccccacccccacccccaccccaccagacctctccactccct 179
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 cctcagctcaaagaggatgcccc-----cacccccaccccaccagacctctccactccct 379
Query: 180 gtgaccccaagtctcttgagggtaaggtgcatcttctctgactgagtacatctatctttg 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 gtgaccccaagtctcttgagggtaaggtgcatcttctctgactgcgtacatctatctttg 439
Query: 240 ttcatttatgtccaattttaatgtattttctaagaactgattggaagtagtcagtcccac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 440 ttcatttatgtccaattttaatgtattttctaagaactgattggaagtagtcagttctac 499
Query: 300 acagtcagagtgaaggagagaaacttttctgagtaaaacacaacttaaaacaaaagcgag 359
|||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 acagtcggaatgaaggagagaaaattttctgagtaaaacacaacttaaaacaaaagcgag 559
Query: 360 gaaataaaaaaacaagcaaccaaagaacaagtttggaagatggagacatggctgaactgt 419
|||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 560 gaaataaacaa-caagcaaccaaagaacaagtttggaagatggtgacatggctgaattgt 618
Query: 420 aatgagcactacctgctcttttttgttttgttttgttttgttttgttttgttttgttttg 479
|||||||||||||| |||||||||||||||||||||||
Sbjct: 619 catgagcactacctgatcttttttgttttgttttgtttt--------------------- 657
Query: 480 ttttgtttttttcttatttt-atttttatttatttattttttattagatattttctttat 538
|||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 658 ----------ttcttatttttacttttatttatttattttttattagatattttctttat 707
Query: 539 ttacatttcaaatgttattccttttcctggtttcccctcctaaaaat-catctatcccat 597
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 708 ttacatttcaaatgttattcctttttctggtttcccctcctaaaaaaacatctatcccat 767
Query: 598 cactctttcttgttggccacttgagttttttatcttaacc 637
| | ||||||||||||||||||||||||||||||||||||
Sbjct: 768 ccccctttcttgttggccacttgagttttttatcttaacc 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
