BAC Information

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BAC

Clone NameMSMg01-334J13
Chromosome14 (Build37)
Map Location 73,271,425 - 73,271,975
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721
Downstream geneLOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334J13.T7 (MSMg01no334_j13.b1)MSMg01-334J13.TJ (MSMg01no334_j13.g1)
ACCAG450053AG450054
length702706
length of high quality
(start - end)
556 (45 - 600)474 (73 - 546)
definitionCHROMAT_FILE: MSMg01no334_j13.b1 PHD_FILE: MSMg01no334_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:04 2005CHROMAT_FILE: MSMg01no334_j13.g1 PHD_FILE: MSMg01no334_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGG
AATTCTTACTGTGTTCCAAGCAATTCGAGGGATCACTCATCCCATAAACA
ACATTTTAGACAGAACACACAGTCCTTTTGTGCTGAGGATGTTGATTGGT
TAGACCTGAACAGAACACACAGTCCTTTTGTGCTTAGGATGTTGATTGGG
TAGATCTGAGAGACAGGTGGATGAAATGAAGGTGTCCTGGAGCTCCTGAG
GCTGCTGATGAAGAATGGTCGTTAATACTTTATTTGAGTACGGAAAAGAA
TGGACTGAGCACTTCATTGTGTGGATGCTGACAAATATGAAGTGACATTT
CAAATTTGATCCATCTTACCCATCCATGTGCATGAGGTAGCTGCAGTGTA
ATGTACTTTAAAGTGCTTAGTTTTGGAAAAATAAAAATGAACGCAAGTGA
ACCAAAGACATTATGGATGGTTTGAAGTCTCCAGGTGCCCTTTCTTTGCC
CAAGAGTCTTGGGTTTCAACCCTGGTCAGTGTTTGCAGAGTGCCCACTTA
TTTATGTATGAAAATCCCCTGAACCACAAGGTTTCCAGTATTTATTTTCA
CATCACATCAAAGGTCAACAATTTCTCTACTCCCAGGTCCACATTGCTCA
TGCCTCAAGGTGGTCCTGATACCACCTAGCTGCATAGTGAGGATTCTGGC
AT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTATTCCAGAAATTCTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGA
TCAGTCTGGCGGTTCCTCATATAACTGGATATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAAT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTATGATACCCAAGATATAANGATACTATTTC
CTAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_j13.b1 MSMg01no334_j13.b1 CHROMAT_FILE:
MSMg01no334_j13.b1 PHD_FILE: MSMg01no334_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:04 2005
         (556 letters)



>mm_chr14_73271220_73272175
          Length = 956

 Score =  973 bits (503), Expect = 0.0
 Identities = 539/551 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttactgtgttccaagcaattcgagggatcactcatcccataaacaacattttag 65
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattcttactgtggcccaagcaattcgagggatcactcatcccataaacaacattttag 697

                                                                       
Query: 66  acagaacacacagtccttttgtgctgaggatgttgattggttagacctgaacagaacaca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 acagaacacacagtccttttgtgctgaggatgttgattggttagacctgaacagaacaca 637

                                                                       
Query: 126 cagtccttttgtgcttaggatgttgattgggtagatctgagagacaggtggatgaaatga 185
           ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 636 cagtccttttgtgctgaggatgttgattgggtagacctgagagacaggtggatgaaatga 577

                                                                       
Query: 186 aggtgtcctggagctcctgaggctgctgatgaagaatggtcgttaatactttatttgagt 245
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 576 aggtgtcctggagctcctgaggctgctgatgaagaatggtcgttaatagtttatttgagt 517

                                                                       
Query: 246 acggaaaagaatggactgagcacttcattgtgtggatgctgacaaatatgaagtgacatt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acggaaaagaatggactgagcacttcattgtgtggatgctgacaaatatgaagtgacatt 457

                                                                       
Query: 306 tcaaatttgatccatcttacccatccatgtgcatgaggtagctgcagtgtaatgtacttt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcaaatttgatccatcttacccatccatgtgcatgaggtagctgcagtgtaatgtacttt 397

                                                                       
Query: 366 aaagtgcttagttttggaaaaataaaaatgaacgcaagtgaaccaaagacattatggatg 425
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 396 aaagtgcttagttttggaaaaataaaaatgagcgcaagtgaaccaaagacatcatggatg 337

                                                                       
Query: 426 gtttgaagtctccaggtgccctttctttgcccaagagtcttgggtttcaaccctggtcag 485
           | |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 336 gcttgaagtctccaggtgccctttctttgcccaagagtcttgggtttcaacagtggtcag 277

                                                                       
Query: 486 tgtttgcagagtgcccacttatttatgtatgaaaatcccctgaaccacaaggtttccagt 545
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 276 tgtttgcagagtgaccacttatttatgtatgaaaatcccctgatccacaaggtttccagt 217

                      
Query: 546 atttattttca 556
           |||||||||||
Sbjct: 216 atttattttca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)